Nocardia terpenica: CRH09_36520
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Entry
CRH09_36520 CDS
T05168
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ntp
Nocardia terpenica
Pathway
ntp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ntp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CRH09_36520 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ntp03021
]
CRH09_36520 (rpoC)
03400 DNA repair and recombination proteins [BR:
ntp03400
]
CRH09_36520 (rpoC)
Enzymes [BR:
ntp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CRH09_36520 (rpoC)
Transcription machinery [BR:
ntp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CRH09_36520 (rpoC)
DNA repair and recombination proteins [BR:
ntp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CRH09_36520 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ATL70875
UniProt:
A0A291RU62
LinkDB
All DBs
Position
complement(8193659..8197612)
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVIVAVDEDLRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD
MAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSTKQLIVDEVL
YRELQDRFGEYFTGAMGAEAIQKLMESFDIEAEAENLREVIRTGKGQKKLRALKRLKVVA
AFQNNGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPLLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTRLEEGAKGEYR
AATKDEPEYGVYSSPAEAQMAVDRGELTVRSLIKVRLTDQRPPRDIEAELFPDGWTRGDA
WTTKTTLGRVLFNDLLPADYAFIDEQMPKKRQAAIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSMSDVLVPPEKTEIMERYEAQSDQIEKKYQRGALDHQERNNALVKIWQEA
TEEVGKALRAHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGIMVAI
AEKQADGTLIRDAHVETSTYARTLATDAVDAKGNVIVEKGHDLGDPAIDALLEAGITDVK
VRSVLTCTTGTGVCAVCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVA
GDDITGGLPRVQELFEARVPKGKAPIAEVSGRVRLEDDDRFYKITIIPDDGSDEVLYDKL
SKRQRLRVYKHDDGTERLLSDGDHVEVGQQLLEGSADPHEVLRVMGPRQVQVHLVHEVQE
VYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLVERAEFEASNRRVVAEGGEP
ASGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYAVPSYDDTYYTPDGFGQTTGAAVPLDDYGFSDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccggatcggcctggccaccgccgaagacatc
cgccagtggtccttcggcgaggtgaagaagccggagaccatcaactaccgcacgctcaag
ccggagaaggacggcttgttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtgacccgcgccaaggtgcgccgcgagcggatgggccacatcgagctggccgctccg
gtcacccacatctggtacttcaagggcgtaccctcgcgcctgggctacctgctggacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtcatcgtggccgtcgac
gaagacctgcgccacaacgagctgtccacgctcgaggcggagatggaggtcgagaagaag
gccgtcgccgatcagcgcgacgccgatctcgaggctcgcgcgcagaagctcgaggccgac
atggccgagctggaggccgagggcgccaagtccgacgtccgccgcaaggtcaaggacggc
ggcgagcgcgagatgcgtcagctgcgcgaccgcgcccagcgtgagctggatcggctcgac
gagatctggaccaccttcaccaagctgtccaccaagcagctgatcgtggacgaggtgctc
taccgcgagctgcaggaccgcttcggcgagtacttcaccggcgcgatgggcgccgaggcc
atccagaagctgatggagagcttcgacatcgaggccgaggcggagaacctgcgcgaggtc
atccggaccggcaagggccagaagaagctgcgtgcgctcaagcgcctgaaggtcgtcgcc
gcgttccagaacaacggcaactcgccgatgggcatggtgctcgacgccgttccggtgatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgactgatcgatctg
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtcgacgct
ctgttcgacaacggccgccgcggccgcccggtcaccggaccgggtaaccgcccgctgaag
tcgctgtcggatctgctcaagggcaagcagggtcgtttccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggtccgcagctgaagctgcaccag
tgcggtctgccgaagctgatggcgctggagctgttcaagccgttcgtcatgaagcggctg
gtcgacctgaaccacgcgcagaacatcaagtccgccaagcggatggtggagcggcagcgg
ccgcaggtgtgggacgtcctcgaagaggtcatcgccgagcaccccgtgctgctgaaccgc
gcgcccaccctgcaccggctgggtatccaggccttcgaaccacttctggtggaaggcaag
gccattcagctgcacccgctggtctgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtcggcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgtccccggcgtccggccgcccgttggccatgccccgtctggac
atggtgaccggcctgtactacctgacccgcctggaagagggcgcgaagggcgagtaccgg
gccgccaccaaggacgagccggagtacggcgtgtactcctcgcccgccgaggcccagatg
gcggtggatcgtggtgagctgaccgtgcgttcgctgatcaaggtgcgcctgaccgatcag
cgcccgccccgcgacatcgaggccgagctgttccccgacggctggacccgtggcgacgcg
tggaccaccaagaccacgctgggccgggtgctgttcaacgatctgctcccggcggactac
gcgttcatcgacgagcagatgccgaagaagcggcaggcagcgatcatcaacgatctcgcc
gagcgctacccgatgatcgtggtcgcgcagaccgtcgacaagctcaaggacgccggtttc
tactgggccacccggtccggtgtcaccgtctccatgtcggacgttctggttccgccggag
aagaccgagatcatggagcgctacgaggcgcagtcggatcagatcgagaagaagtaccag
cgtggtgcgctcgatcaccaggagcgcaacaacgccctggtcaagatctggcaggaggcc
accgaagaggtcggtaaggcgctgcgcgcgcactacccggccgacaacccgatcatcacg
atcgtcgattcgggcgccacgggtaacttcacccagacccgtaccctcgcgggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcggccgatcaagtcctccttccgc
gagggcctgacggttctggagtacttcatcaacacccacggtgcgcgaaagggtctggcc
gacaccgcgcttcgcaccgccgactcgggttacctgacccgtcgtctggtggacgtgtcg
caggacgtcatcgtgcgcgagaccgactgtggcaccgagcgcggcatcatggtcgcgatc
gcggagaagcaggccgacggcacgctcatccgggacgcgcacgtggagaccagcacctac
gcccgcacgctggccaccgacgcggtcgacgccaagggcaacgtcatcgtggagaagggt
cacgacctcggcgacccggccatcgatgcgctgctggaggccggtatcaccgacgtcaag
gtgcgttcggtgctgacctgcaccaccggtaccggtgtctgcgcggtctgctacggccgt
tcgatggcgaccggcaagctggtcgacatcggcgaggccgtcggtatcgtcgccgcccag
tccatcggtgagcccggtacccagctgaccatgcgtaccttccaccagggtggtgtcgcc
ggtgacgacatcacgggtggtctgccccgcgtgcaggagctgttcgaggcgcgcgtgccc
aagggcaaggcgccgatcgcggaggtctccggccgggtgcggctggaggacgacgaccgc
ttctacaagatcaccatcattccggacgacggttcggacgaggtgctctacgacaagttg
tcgaagcgtcagcggctgcgggtgtacaagcacgacgacggcaccgagcgtctgctctcc
gacggcgaccacgtcgaggtcggccagcagctgctggagggctcggcggatccgcacgag
gtgctgcgcgtgatgggcccgcgtcaggtgcaggtccacctggtccacgaggtccaggag
gtgtaccggtcgcagggtgtgtccatccacgacaagcacatcgaggtcatcgtccggcag
atgctgcgccgcgtcacgatcatcgactcgggcgcgacggagttcctgcccggttcgctg
gtcgagcgcgccgagttcgaggcatcgaaccgtcgcgtggtggccgagggcggcgagccc
gcctcgggtcgcccggtgctgatgggtatcaccaaggcgtcgctcgcgacggattcgtgg
ctgtcggcggcctccttccaggagaccacccgcgtgctcacggacgccgcgatcaactgc
cgctccgacaagctgatcggcctgaaggagaacgtgatcatcggcaagctgatcccggcc
ggtaccggtatcaaccgctaccgcaacatccaggtgcagccgaccgaggaggcccgcgcg
gccgcctacgccgtgccgtcctacgacgacacctactacaccccggacggcttcggccag
accacgggtgccgcggtgccgctggacgactacggcttcagcgactaccggtaa
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