Novibacillus thermophilus: B0W44_02125
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Entry
B0W44_02125 CDS
T04694
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ntr
Novibacillus thermophilus
Brite
KEGG Orthology (KO) [BR:
ntr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ntr03009
]
B0W44_02125
Enzymes [BR:
ntr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
B0W44_02125
Ribosome biogenesis [BR:
ntr03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
B0W44_02125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
Methyltransf_15
TRM5-TYW2_MTfase
MTS
Cons_hypoth95
PrmA
Methyltransf_11
N6_N4_Mtase
UPF0020
PCMT
Methyltransf_23
Ubie_methyltran
RrnaAD
TehB
Methyltransf_4
DOT1
Motif
Other DBs
NCBI-ProteinID:
AQS54746
UniProt:
A0A1U9K3Z2
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All DBs
Position
399933..401318
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AA seq
461 aa
AA seq
DB search
MSRRKPPVCLHQEITLTLTGQSHTGDGVGKYEGFAVFVPGGIAGETVRAKVTKVKPTYAH
ARIVRILKESPDRVTPPCPIFDRCGGCQLQHLAYDGQLKMKTRLVRDNLERIGQLKEVSV
RPVMGMRDPWRYRNKAQVPFGEGEGGLVAGFYEQGTHDIIDMESCLIQREESDEVVRTVK
DIVRELGIPPYREKDHTGVLRHVVTKVGANTGQLMIVLVTNGPDLPHRDELVKRFVDRFP
QLQSVIQNVNSKRTNVIMGEDSRTLWGEDTIIDTIGDIAFAISPRSFYQVNPEQTEVLYR
EVLKAADLKGGETVVDAYCGIGTISLFLARHARRVLGVEVVDEAIADAKRNARLNGIENV
HFAVGKAEDVMPWWYAQGVRPDVIVVDPPRKGCDERLLDTIADMKPERTVYVSCNPSTLA
RDLRILADHGFTVEYVQPVDMFPHTVHVECCVLLEKNRRYV
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgagccgacgaaaaccacctgtctgtttacatcaagagatcacgctgacccttacggga
cagagccacaccggtgacggtgtgggcaaatatgaaggatttgccgtgttcgtacccggt
ggcatcgcgggggagacggttcgcgccaaagtgacgaaagtcaagccgacttacgcccat
gcccgcatcgttcgcattttgaaagaaagtccggaccgggtgacaccgccgtgtccgatt
ttcgaccgttgcggcggctgtcaattgcaacacctggcgtacgacggccagttaaagatg
aaaacccgcctcgtgcgggacaacctcgagcgcatcggtcaattgaaagaggtctcggtc
cgtccagtcatgggcatgcgtgatccgtggcgctatcgcaacaaagcgcaagtcccgttc
ggcgagggcgagggaggacttgtggccggtttttacgaacagggaacccacgacattatc
gacatggaatcgtgcctcatccagcgcgaagaaagtgatgaagtggtgcgcacggtgaag
gacattgtccgggaactcggcattcccccttaccgggaaaaagaccacacaggtgtcttg
cgccacgtcgtcacaaaggtgggggccaatactggccagctgatgatagtcctcgtcacg
aacggaccagatctgccgcatcgggacgagctcgtgaagcggttcgtcgaccgctttccc
caactccaatcggtcatccagaacgtgaacagcaagcggacgaatgtcatcatgggggaa
gacagccgcactttgtggggagaggacacgataattgatacgatcggcgatatcgccttt
gccatttccccccgttcgttttatcaagttaaccctgagcagacggaagtcctgtacaga
gaagtgctcaaggccgcagatctgaaaggcggcgagaccgtcgttgacgcctactgcggc
atcgggacgatctccctctttttggcccggcacgcccgccgagtgctcggcgtggaagtc
gtcgatgaagccattgccgacgcaaagcgcaacgcgaggctgaacggcatcgaaaacgtg
catttcgccgtcggcaaagcggaagacgtcatgccgtggtggtacgcccagggcgtgcgt
ccggatgtcatcgtcgtcgacccgccgcgcaaaggctgtgatgaacgattactcgacacc
attgcggacatgaaacccgaacgtacagtttacgtttcgtgcaatccgagcacactggcc
cgggatctgcgcattttagccgatcacggcttcactgtagaatacgttcaacccgtcgac
atgtttccgcacacggtacacgtggagtgctgtgtgttactcgaaaaaaatagaagatat
gtatga
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