Candidatus Nitrosoglobus terrae: TAO_0357
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Entry
TAO_0357 CDS
T05173
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ntt
Candidatus Nitrosoglobus terrae
Pathway
ntt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ntt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TAO_0357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ntt03019
]
TAO_0357
03009 Ribosome biogenesis [BR:
ntt03009
]
TAO_0357
Enzymes [BR:
ntt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TAO_0357
Messenger RNA biogenesis [BR:
ntt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TAO_0357
Ribosome biogenesis [BR:
ntt03009
]
Prokaryotic type
rRNA helicases
TAO_0357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BAW79727
UniProt:
A0A1Q2SKU2
LinkDB
All DBs
Position
complement(368059..369585)
Genome browser
AA seq
508 aa
AA seq
DB search
MLSSTEALSFDNFAINTPILQAIKQLGYQTPTLIQAKTIPYFLKGYDLIGQAQTGTGKTA
AFAVPILHHLNLSRREPQALVLVPTRELAIQVSEAFQNYAQYLEGFYSLPLYGGQPMGNQ
LRQLKHGAHVIVGTPGRIMDHLRRKSLQIDKLTTIVLDEADEMLKMGFIEDVEWILKQAP
AQRQTALFSATMPDSVRSIASRHLNTPHDIKIKEKTATLPPINQRYWLVSGLHKLDALTR
ILEVEDFDATIIFVRTKIATEELARKLETRGYAAAALNGDMSQSFREKVVDQLKKNLLDI
IVATDVAARGLDVKRISHVVNYDIPYDIETYIHRIGRTGRAGRPGTATLFVSPQERRILN
AIKKVTGYPIHETQLPSLQQVRDRRTKQFKQQIMATLEKENLVALRNLIQQWIQEDNISA
LDIAVALTYSMQGERLLPEHQVTRPAIHNEVTRSSPPTKRKKLAPLKSVKREEIKQKKPY
QKTMKKQKNYHTLSLNKGKNNHLSVPSI
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgctgtcctctacagaagctctatcctttgataattttgctattaatactcctattctg
caagcaattaagcagctcggctatcagacccctacgctgattcaagctaagacaatcccc
tattttttaaaaggatatgacttaattgggcaggcacaaactggaacaggtaaaaccgca
gcctttgcagtcccaatcctacaccacctaaatttatcgcggagagagccgcaggcgcta
gtactcgttccaacacgtgagcttgcgatccaagtttcagaggcattccaaaactatgcg
cagtatttagaaggtttttattccctacctctctatggcggccaacctatggggaatcag
ctacgtcaacttaaacacggcgcccatgtcatcgtaggtactccaggcagaataatggat
catctacggcgtaaaagtctacaaatagataagctcacaactatagttttagatgaggcc
gacgagatgttaaaaatggggttcatcgaagacgtagagtggattttaaaacaagcacct
gctcaacgccaaactgccctcttttccgcgactatgccggattctgtacgtagcattgcg
agccgtcatctaaatactcctcacgatatcaaaatcaaagagaagaccgccactctccct
cctattaaccaacgctattggcttgtatccggattacacaaattggatgctctcacccga
atattagaggttgaggattttgatgctactatcattttcgttcgtaccaaaatagcaaca
gaagaattagcgagaaaactggaaacacgagggtatgctgcagcggcgcttaacggtgat
atgtctcagtcatttcgagaaaaagtagtagatcaattaaagaaaaatttgttggatatc
attgtagcgactgatgtagccgcccgtggattggatgtaaaacgtattagccacgtagta
aattacgatatcccctatgatattgaaacttacattcatcgtattggccgtactggccgc
gcaggccgccccggtaccgcaacgctctttgtctctccacaggagcgacgcatattaaat
gctattaaaaaagtaactgggtatcctattcatgaaacgcagttacctagccttcaacag
gttagagatcggcgtactaaacagtttaaacagcaaattatggctaccttagaaaaggag
aatcttgtagctctccgaaatttaattcagcaatggattcaagaagataatatctccgct
ctagatatagcagtagcattaacttattctatgcaaggtgaacgtctattgccagaacat
caggtaactcggccagctatccataatgaggtaactcgtagctcgccgcctacaaagcgt
aaaaaattagcaccattaaaatctgtgaaaagggaagaaatcaaacaaaaaaaaccatac
cagaaaacaatgaaaaaacagaaaaactatcatacgctctctctcaataagggcaagaac
aatcatctctccgttcctagtatttaa
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