Nitratireductor thuwali: NTH_00704
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Entry
NTH_00704 CDS
T09967
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ntu
Nitratireductor thuwali
Pathway
ntu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ntu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NTH_00704 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ntu03021
]
NTH_00704 (rpoD)
Transcription machinery [BR:
ntu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NTH_00704 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Sec8_N
PBP1_TM
Motif
Other DBs
NCBI-ProteinID:
UUP16259
UniProt:
A0ABY5MH97
LinkDB
All DBs
Position
complement(727805..729805)
Genome browser
AA seq
666 aa
AA seq
DB search
MATKEKEEVETEREGSDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSGEVSSEQI
EDTMAMLSDMGINVVEDDEAAEDSEQDNSEEDSTEVAEQTGTAVQPTTTKKEPTDRTDDP
VRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWRDELNEGKIL
LREIIDLEATYAGPEAKQAPVVQRPDENAKPAEEQPKRSRDDDITNVGGEAQAEDDDDED
DEANLSLAAMEAELKPGVMETLDFIADTYKKLRKLQDQQVESSLADGDSLSDSQKRRYKQ
LKDELITSVKSLSLNNQRIETLVEQLYDINKRLVQNEGRLLRLSESYGVKREEFLKAYQG
YELDPNWTETVAGLPGKGWKEFAASEADTIDALRTEIQNLAQETAISIGEFRKIVNQVQK
GEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF
STYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKL
AMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKMAVLPIDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKL
RSFLDS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaaagagaaggaagaggtcgagaccgaacgcgagggctctgacgggccgctg
ctcgacctttccgacgacgcagtcaagaaaatgatcaaggccgccaagaagcgcggctat
gtgaccatggacgagctgaacgcggttctgccttccggcgaggtgtcctccgagcagatc
gaggacacgatggccatgctttccgacatgggcatcaatgtcgtcgaggatgacgaggcg
gccgaggattccgagcaggacaacagcgaggaagacagcacggaagtcgccgagcagacc
ggcaccgccgtgcagccgacgaccaccaagaaagagccgacggaccgcacggacgatccc
gttcgcatgtatttgcgcgagatgggatcggtcgagcttctttcgcgcgagggcgaaatc
gccatcgccaagcgcatcgaggccggccgcgagacgatgatcgccgggctgtgcgagagc
ccgctgaccttccaggcgctcatcatctggcgcgacgaattgaacgaaggcaagatactc
cttcgcgagatcatcgaccttgaagccacctatgccgggcccgaggccaagcaggcgccg
gtggtgcagcggccggacgagaatgccaagccggccgaagagcagcccaagcgttcgcgc
gacgacgacatcaccaatgtgggcggcgaggcacaggccgaggatgacgacgacgaggac
gacgaggccaatctgtcgctggcggcgatggaagccgagctcaagcccggcgtcatggaa
acgctcgacttcatcgccgacacctacaagaagctgcgcaagctgcaggaccagcaggtg
gaatcgagcctggccgatggcgacagcctgtcggacagccagaagcggcgctacaagcag
ctcaaggacgaactcatcacttcggtgaagtccttgtcgctcaacaaccagcgtatcgag
acgctggtcgagcagctctacgacatcaataaaaggctggtgcagaacgaagggcgcctg
ctgcggctttccgaaagctatggcgtcaagcgcgaggagttcctcaaggcttaccagggc
tacgagctcgatccgaactggacagaaacggttgccgggctgccgggcaagggctggaag
gaatttgctgccagcgaggccgacacgatcgatgcgctgcgcaccgagattcagaacctg
gcgcaggagaccgcgatctccatcggcgagttccggaagatcgtgaaccaggtgcagaag
ggcgagcgcgaggcggcgatcgccaagaaggagatggtggaggccaatctgcgcctcgtg
atctccatcgccaagaagtacacgaaccgcggcctgcagttcctggatctcatccaggag
ggcaatatcgggctgatgaaggcggtcgacaagttcgagtaccgccgcggctacaagttc
tcgacctatgcgacgtggtggattcgacaggcgatcacccgctcgatcgccgaccaggcg
cgcacgatccgtattccggtgcacatgatcgagacgatcaacaagatcgtgcggacctcg
cgccagatgctgcacgagatcggccgcgagccgacgccggaggaactggccgagaagctc
gctatgccgctcgaaaaggtgcgcaaggtcctgaagatcgccaaggaaccaatctcgctc
gagacgcccgtgggcgacgaggaggattcgcatctcggcgacttcatcgaggacaagatg
gcggtgctgccgatcgatgcggcgatccaggccaatctgcgcgagacgacgacgcgggtg
ctggcctcgttgacgccgcgcgaggagcgcgtgctgcgcatgcgcttcggcatcggcatg
aacaccgaccacacgctcgaagaggtgggccagcagttctcggtcacccgcgagcgcatc
cgccagatcgaggccaaggcgctgaggaagctcaaacatccgagccgcagccgcaagcta
cggagcttcctggacagctag
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