Nitratireductor thuwali: NTH_01834
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Entry
NTH_01834 CDS
T09967
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ntu
Nitratireductor thuwali
Pathway
ntu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ntu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NTH_01834 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ntu03019
]
NTH_01834 (cshA)
03009 Ribosome biogenesis [BR:
ntu03009
]
NTH_01834 (cshA)
Enzymes [BR:
ntu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NTH_01834 (cshA)
Messenger RNA biogenesis [BR:
ntu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NTH_01834 (cshA)
Ribosome biogenesis [BR:
ntu03009
]
Prokaryotic type
rRNA helicases
NTH_01834 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
UUP17370
LinkDB
All DBs
Position
complement(1888328..1890166)
Genome browser
AA seq
612 aa
AA seq
DB search
MIEFEGIAPALGRALANRGYETLTPVQQAVLAPEMDGADALVSAQTGSGKTVAFGLAIAP
TLLDGAERFGEAGAPVALAIAPTRELALQVMRELEWLYAETGAKVTSCVGGMDMRSERRQ
LDRGAHIVVGTPGRLCDHIRRGGLDMSSLRAVVLDEADEMLDLGFREDLEFILDAAPQDR
RTLMFSATVPRAIANLAKNYQREAVRISTAAEQKQHVDIEYRALTVAASDRENAIINVLR
YYEAKNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIA
TDVAARGIDLPNLELVIHADLPTNPDTLLHRSGRTGRAGRKGVSALIVPQNARRKAERLL
QGAKIQAAWASPPSADDVLRRDNERLLADPALAEPVSEDEAAFVDELLQNRDPRQVAAAF
VRLYRGGKSAPEDLMPVAHRDERQREDTRPSSRNEFAESAWFSLSVGRKQNAEPRWLIPL
LCRAGGISKREIGQIKMQTEETFVELDAASVKRFLAAVGPDMTLENSIRLKQLDGPPGFS
RSGHGKPYSGGKPARGEAPGGWEKPGKKPFKKQHRKGGKPGAAGPEGEAGFFKKKADAGG
AAKPKKAKKKAP
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgattgaatttgaaggcattgcgcctgcccttggccgggcgctggccaatcggggctat
gagacgctgacgcccgtgcagcaggccgtgctcgccccggaaatggacggggcggatgcc
ctggtttccgcgcagaccggatccggcaagaccgtggccttcggcctggcgatcgcgccg
acgctgcttgacggagccgagcgcttcggcgaggccggtgcgccggtcgcgctggcgatc
gcgcccacgcgcgagcttgcgctgcaggtgatgcgcgagctcgagtggctgtatgccgag
accggagcgaaggtcacctcatgcgtcggcggcatggacatgcgctccgagcgccgtcag
ctcgaccgcggtgcgcatatcgtggtgggcacgccgggacggctctgcgaccacataagg
cgcggcgggctcgacatgtcttcgctgcgcgccgtggtgctggacgaggccgacgagatg
ctcgatctcggcttccgcgaggacctggaattcatcctcgacgccgcgccgcaggaccgg
cgtacgctgatgttctcggccaccgttccgcgcgccatcgccaatctggctaagaactac
caacgcgaggcggttcgcatcagcaccgccgccgagcaaaagcagcatgtggacatcgag
tatcgggcgctgacggttgccgccagcgaccgcgagaacgccatcatcaacgtccttcgc
tactacgaggcgaagaacgccatcgtcttctgctcgacgcgggcggcggtgaaccatctg
accgcgcggttcaacaatcgcggtttttccgtcgtcgcattgtctggcgagttgagtcag
aacgagcgcacgcatgcgctccaggccatgcgcgacgggcgggcgcgggtgtgtattgcc
accgacgtggcggcgcgcggcatcgacctgccgaacctggagctggtcatccacgccgac
ctgccgaccaacccggacacgctgctgcatcgcagcgggcgcacggggcgggcggggcgc
aagggcgtgagcgctctcatcgttccgcagaatgcgcggcgcaaggccgagcggcttttg
cagggcgccaagatccaggcggcgtgggcgtcgccgccttccgccgacgacgtgctgcgg
cgagacaatgagcggcttctggccgatccggcgctggccgagcccgtgagcgaggatgag
gcggccttcgtcgacgagctgctgcagaaccgcgatccgcgccaggtggcggcggctttc
gtaaggctttatcgcggcggcaaatcggcgcccgaggatctgatgccggttgcccatcgc
gacgagcgccagcgcgaggacacaaggccatcgtcccgcaacgagttcgcagagagcgcc
tggttctcgctttcggtgggacgcaagcagaatgccgagccgcgttggctcattccgctg
ctgtgccgtgcgggcgggatatccaagcgcgagatcggccagatcaagatgcagaccgag
gaaaccttcgtcgaactggacgccgccagcgtcaaacggtttctggctgccgtcggtccg
gacatgacgctggaaaattcgatacgcctgaagcagcttgacggtccgccgggattttcg
cgttccggccacggaaaaccctattcgggcggcaagcccgcacgcggcgaggctccaggc
ggctgggaaaagcccggcaagaagcctttcaagaagcagcatcgcaagggcggcaaaccg
ggcgccgcggggccggaaggcgaggccgggttcttcaagaagaaggccgatgcgggcggc
gcagccaagccgaagaaggcgaagaagaaggctccgtag
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