Nitrosopumilus ureiphilus: C5F50_02455
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Entry
C5F50_02455 CDS
T06690
Symbol
rpoA1
Name
(GenBank) DNA-directed RNA polymerase subunit A'
KO
K03041
DNA-directed RNA polymerase subunit A' [EC:
2.7.7.6
]
Organism
nue
Nitrosopumilus ureiphilus
Pathway
nue03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nue00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C5F50_02455 (rpoA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nue03021
]
C5F50_02455 (rpoA1)
Enzymes [BR:
nue01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C5F50_02455 (rpoA1)
Transcription machinery [BR:
nue03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
C5F50_02455 (rpoA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF5667
DNTTIP1_dimer
Motif
Other DBs
NCBI-ProteinID:
QLH06065
UniProt:
A0A7D5RFV4
LinkDB
All DBs
Position
450222..454013
Genome browser
AA seq
1263 aa
AA seq
DB search
MSLQAIKSIDGIRFSVWSPTEVRKYSVAEITAPETYDEDGMPVQGGLMDGRLGTLEPGQK
CLTCGNTAARCPGHFGHIELAEPILHIAFIDNIYKLLQSTCRSCARLKVPQEDLDEFKKI
KDKHAAYTVISQKRIPEQIIEKAKKAKECPHCGKTQYELVFTKPTIFVEKTEIGEHRLLP
ITIRERFSQILDEDLLLLSYDPVTARPEWFILQALPVPPVTVRPSIILETGIRSEDDLTH
KMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHSTTYFDNEVSGIPQAHHRSGRPLKT
LTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLDLSEVGVPEQVAMKLTIPEIVTEWN
IERMRKLVINGPEKFPGVNYIVRPDGVKIRLDFVEDRSTIAETLEIGYLIERHLADGDIV
MFNRQPSLHQMSIMAHYVRVLPGKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAI
LLMRVQDQLISPRYGGPIIGALRDFVTGAYLLTKDETTLSVQEFSNLAMLGGYKDTLPKP
ATKTKDGPAYTGKQLFSLFLPKDFNYVLTSKWSKGTNGPAKDVVIKNGELISGVIDKTSI
GAEEPESVLHRITKDYGNAVGKNFLNSILIMVKQFITSYGFSYGFGDLEVPEKEKQQILD
DIQATYDIVSDLTNQYEKGTLKLTRGMRPEEALEAYIVNELGKARDKAGSTANHSLDNSN
AGKIMATTGARGSSLNVGQMAGALGQQSRRGNRLHDGYHNRALTHFQEHDNNPDAHGFVK
SNYREGLSALEFFFHAMGGREGLVDTAVRTQQSGYMQRRLINALEHIRLEYDGTVRDPHG
HIVQFLYGEDGIDVAKSDHGEAFNAHRLAESQTMIDSGKKATKDEIDTLIKKYTKTFSPR
LISLVSEALHESSLSKDGVEAVCKKGLSLYNKAKVEPGQAVGIITAQSIGEPGTQMTLRT
FHFAGIKERNVTLGLPRLIELVDARKKPVTPTMDIYLDNESKKSREKAIEVARNVLQTKI
SALIANSETDYATEIKLILSENRLKERGCSIAEVEASLASNKKFKMETVGELITLKLVEE
SDTATVIAIRNKVLNTTVKGVPDIERVTLVQKDDEWVIQTTGSNIAKVLEVKGIDKTNVR
TNNVFEIAGTLGIEAARNALINELNHTLGDQGLEVDNRYIMLVSDLMCSRGYMQQIGRHG
IAGTKDSVLARAAFEITVPTIAHAALGGEVEQLKGITENVIVGSNIPIGSGTVDLYMQVS
KKK
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttcaagcaatcaaatcaattgatggaattcgtttttcagtatggtctccaaca
gaagttagaaaatactctgttgctgaaattactgcacctgaaacatatgatgaagatgga
atgccagttcaaggaggccttatggatggacgcctcggtactcttgaacctggacaaaaa
tgtctaacttgtggaaatacagctgctagatgtcctggacactttggtcacattgaactt
gcagaaccaatattgcatattgcattcattgataacatctacaaactattacaatcaaca
tgtcgttcttgtgcaagactcaaagttccgcaagaagatctagatgaattcaaaaaaatc
aaagacaaacatgctgcatacactgtaatttcccaaaaacgtattccagaacaaattata
gaaaaagcaaagaaggcaaaagaatgtcctcattgtggaaaaacacagtatgaactagtc
tttacaaaacccactatcttcgttgaaaagacagagattggtgaacatagattgctccca
attactatcagagaaagattttcacaaattcttgatgaagatttactgctattgtcatat
gatcctgttactgcaagacctgaatggttcattctccaggcattacctgtcccacctgta
actgtaagaccatcaatcattcttgagacaggaattagatctgaggatgacttgacacac
aaaatggttgacatcatcagagttaatcagagactaaaagaaagtaaagaggcaggaact
ccgccactcattgtacaagacctagttgacttgctacaatatcactctacaacatatttt
gataatgaagtttctggaattcctcaagcacatcatcgttctggacgtccactcaaaacg
ttaactcaaagactcaaaggaaaagaagggagatttagaggttcgttatctggaaagaga
gttgacttttcaagtagaactgtaatttcacctgatcctaacttggatctgtccgaagtt
ggagttcctgaacaagttgctatgaaactaacaattcctgaaattgttacagaatggaac
attgagagaatgcgaaaacttgtaattaatggacctgaaaaattcccaggtgtaaactat
atcgttagacctgacggtgtaaagattagattagatttcgtagaagaccgttctaccatt
gcagagactcttgaaattggttatctaattgaaaggcatcttgcagatggtgatattgtt
atgtttaacagacaaccttcacttcaccaaatgtctatcatggctcactatgttagagta
cttccaggtaaaactttcagattgcatccttcagtttgtcctccatacaacgcagacttt
gatggagatgagatgaaccttcatgttcctcaaagtgaggaagcaagagcagaagcaatt
cttttgatgagggttcaagatcaattaatctctccaagatacggtggtccgattattggg
gcactcagagactttgtaactggtgcataccttctaactaaagacgaaacaactctctct
gttcaagaattctcaaaccttgcaatgcttggtggttacaaagatacacttccaaaacct
gctactaaaacaaaagacggaccagcatacactggaaaacaactattctcactattcctt
ccaaaagacttcaactatgtccttacatcaaaatggtcaaagggaacaaatggccctgca
aaagatgttgtaattaaaaacggtgaactaatcagcggtgtaattgataaaacatcaatt
ggtgcagaagaaccagaaagtgtcttacaccgaattacaaaagactatggaaatgcagtt
ggaaagaatttcttaaactctattctcattatggtaaaacaattcatcacaagttatgga
ttcagttatgggttcggtgatcttgaagtgccagaaaaagaaaaacaacagattctcgat
gacattcaagcaacttatgatattgtctctgatttgactaatcaatatgaaaaaggaact
ctcaaactcacaagaggtatgagacctgaagaagcacttgaggcatacatcgtaaacgaa
ttaggtaaagcaagagacaaagctggttctactgcaaaccattcccttgataattccaat
gctggtaaaattatggccacaactggtgctagaggctcctcacttaatgtaggtcagatg
gcaggtgcattaggacaacagtcaagaagaggtaacagacttcatgatggttaccacaat
cgtgcattgacacatttccaagaacatgataataatccagacgcacacggatttgtaaaa
tccaattacagagaaggtctctctgcactagaattcttcttccatgcaatgggtggtcgt
gaaggacttgtagatactgcagttagaacacaacaaagtggttacatgcagcgtagattg
atcaatgcgttagaacacattagattagaatatgatgggacagtaagagatccacatggg
cacatagtacaattcctttacggtgaagatggaatagatgttgcaaaaagtgatcatggt
gaagcattcaacgctcatagattagctgaatcccaaaccatgattgattctggtaaaaag
gcaacaaaagatgagattgatactttgattaaaaaatacacaaagacattcagtccaaga
ctcatatcacttgtatctgaagccttgcatgaatctagtctaagtaaagatggtgtagag
gcagtttgtaagaaaggactatcactttataacaaagccaaagtagaacctggacaagca
gtaggaattatcactgctcagtcaattggtgaacctggtactcagatgaccttgagaaca
ttccactttgcaggaattaaagaaagaaacgtaaccttgggtcttccaagattaattgaa
ctagttgatgcaagaaagaagccagttacgccaactatggatatctatcttgacaacgaa
tcaaagaaatccagagaaaaagcaatcgaagttgcaagaaatgtattgcaaactaaaatc
agtgcattaattgcaaacagtgaaactgactatgctaccgaaattaaattaattctaagt
gaaaacagactaaaagaaagaggatgctcaattgctgaagtcgaagcatcacttgcatca
aacaagaaattcaaaatggagactgttggtgaactaattactctcaaactagttgaagag
tctgatactgcaacagttattgcaattagaaataaagttctaaacactacagtgaaggga
gttccagacattgaacgtgtgacccttgttcaaaaagatgatgaatgggttattcaaaca
actggttctaacattgccaaagtacttgaagtaaagggcattgacaaaacaaacgtcaga
acaaacaatgtgtttgaaatcgcaggaactcttggaattgaggctgcaagaaacgcattg
attaacgaactcaatcatactctgggcgaccaaggattagaggtagacaatagatacatc
atgttagtatctgacttgatgtgctcaagaggttacatgcaacaaattggtagacacgga
attgccggtaccaaagacagtgttcttgcaagagcagcatttgaaattacagttcctaca
attgcacatgctgcacttggaggggaagttgaacaactcaaaggcatcactgaaaatgta
attgtcggtagcaacattccaattggaagtggaactgttgatctatacatgcaagtaagc
aagaaaaaataa
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