Nitrosopumilus ureiphilus: C5F50_09065
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Entry
C5F50_09065 CDS
T06690
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nue
Nitrosopumilus ureiphilus
Pathway
nue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C5F50_09065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nue03019
]
C5F50_09065
03009 Ribosome biogenesis [BR:
nue03009
]
C5F50_09065
Enzymes [BR:
nue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C5F50_09065
Messenger RNA biogenesis [BR:
nue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C5F50_09065
Ribosome biogenesis [BR:
nue03009
]
Prokaryotic type
rRNA helicases
C5F50_09065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_30
Helicase_C_2
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QLH07210
UniProt:
A0A7D5M8M2
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All DBs
Position
1569481..1570800
Genome browser
AA seq
439 aa
AA seq
DB search
MTKFTELGLKDEILKGIADLGFDEAFPIQEAVIPVLLSGRDVVGQAHTGSGKTAAFALSM
LQEIQPKNGIQGLIMAPTRELAMQISDEIKKFGKYTGIKVATVYGGQGMGIQLDTLHRGV
EIVVATPGRLIDHLKRGSIELRDITHIVLDEADTMLDMGFVDDISFILDLAPEDRVMSLF
SATMPTEILRLSEEYLNNPKQFLLDADDLSGEGIDQSYLVIKDRDKFKYLIDFIKQTKGQ
SIVFCSTKYRTRDVAKFLHQEKYNAVAIEGDMSQHRREQSMGKFRSGKADILVATDVASR
GIDVPRVELVVNYDVPNQEMAYFHRIGRTARAGALGKAITFVSYSSVGDWNLIKRQIKVP
LRDLNQEMGIQISIPDPLKRQTPSRRYGGQSRSNYSRGGGRSGGYGRSDRSRNPRDDRGG
RKRYGDNDNKNSYGGRSRW
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttacagaattaggattaaaagacgagatactaaaaggaattgctgatcta
ggatttgatgaagcatttccaattcaagaggcagttattcccgtacttctttcgggaaga
gatgttgtaggacaagcacatacaggttctggaaaaactgcagcctttgcgctatcaatg
ctgcaagagattcaaccaaaaaacggtattcaaggattaatcatggcccctacaagagaa
cttgcaatgcaaattagtgatgaaattaaaaaattcggcaaatacacaggaatcaaagta
gcaacagtttatggaggacaaggaatgggaattcagttagatactcttcatagaggagta
gagattgttgttgcaactccaggtagattaattgatcatctcaaaagaggatcaattgaa
cttagagacattacccatattgtacttgatgaagcagacacaatgctcgatatgggattc
gtagatgatatttcatttattttagatttagcaccagaagatagggtaatgtcattgttt
tcagcaacaatgcctactgaaatcctaagattatcagaggaatacctcaataatccaaag
caattccttttggatgcagatgatcttagtggagaaggaattgatcaatcatacttggta
attaaagaccgagacaaattcaagtatctgattgattttatcaaacaaacaaaaggtcaa
tccattgtattttgttcaactaaatatagaaccagagatgtagcaaaattcctccatcaa
gagaaatacaatgcagttgcaattgagggagacatgtcacagcacagaagagagcaatct
atgggcaaattcagaagtggaaaagcagacattcttgttgcaacagatgtagcatcaaga
ggaattgatgttccaagagtagaattagtagtaaattatgatgtaccaaatcaagagatg
gcatattttcatagaattggaagaaccgccagagcaggagcacttggtaaagcaatcaca
tttgtttcatattcatcagtaggagattggaatctcattaaacgtcaaatcaaagttcct
ctcagagatttaaatcaagagatgggaattcaaatatccattccagacccactaaaaaga
caaacaccttcaagaagatatgggggtcaatcaagatctaactattccagaggaggaggg
cgttctggaggatacggaagatctgatagaagcagaaatcctagagatgatagaggagga
agaaagagatacggtgataatgataataaaaacagctacggtggacgtagtagatggtaa
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