Nonlabens ulvanivorans: R1T42_01920
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Entry
R1T42_01920 CDS
T09493
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nul
Nonlabens ulvanivorans
Pathway
nul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R1T42_01920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nul03019
]
R1T42_01920
Enzymes [BR:
nul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R1T42_01920
Messenger RNA biogenesis [BR:
nul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R1T42_01920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
APP_amyloid
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WOI23208
LinkDB
All DBs
Position
421027..422304
Genome browser
AA seq
425 aa
AA seq
DB search
MTFKELGLVEPILRALQDQGYENPTPIQAQSIPVLLKGKDLLGVAQTGTGKTAAFSIPIL
QHLYNGAPPKGRRPIKALVVTPTRELAIQIDENFKAYAKYTDIRNTVIYGGVKQAQQVNR
LKSGIDVLVATPGRLLDLINQGFITLKHIEYFVLDEADQMLDMGFIHDIKKLLKLLPHER
QSLFFSATMPKTIVELSRQILGDFERVTIAPEKTTAEKVEQQIYHVNKKHKTALLIELLE
TKLLDSTLVFSRTKHGANKIVKDLEKAGIGSAAIHGNKSQAARQRALGDFKDGKIQTLVA
TDIAARGIDIDELSYVVNYDLPNVAESYVHRIGRTGRAGASGLAVSFCMLEERPFLKDIE
KLIQQQIPVIENHEYPFKMEDAAEPSLKKQGQRGRRPQRKTGSGSGKPKSGGSKNTGGNK
PRRRY
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagaactagggctcgtagagcctatcttgcgtgcgctgcaagaccaagga
tatgaaaatcctacacctattcaagcgcaatccattcctgttttattaaaagggaaagat
ttattaggagttgcacagacaggtaccggtaaaacagccgcgttttcaattccaatttta
caacatttatataacggtgcaccgcctaaagggcgcagacctattaaagcactagtagta
acacctacacgagaacttgctatacaaattgatgagaatttcaaggcctatgcaaagtat
actgatattagaaatacggttatttacggtggtgttaaacaagcacaacaagtcaataga
cttaaaagtggtatcgatgttctagtcgcaacacctggtagattactagatttaattaat
caaggttttattaccttaaagcatattgaatactttgtcctagatgaagcagatcaaatg
ctggatatgggttttatccatgatattaaaaaactactgaaattattgcctcatgagaga
cagtcgcttttctttagtgctaccatgcctaaaactattgtagagttatctagacaaatc
ttaggtgattttgagcgtgtgactatcgcacctgaaaaaacaactgcagagaaagtagag
caacaaatctatcatgttaataaaaagcacaagacagcattattaatcgagcttttagaa
actaagttattagattctacactcgtgttctcacgtacaaaacatggtgctaataagata
gtaaaagatctagaaaaagcaggaatcggtagtgcagccattcacggtaataaatctcaa
gcagctcgacaaagagctcttggtgattttaaagacgggaaaattcaaacattagtagct
acagatattgcggcacgtggtatcgatattgatgagttgagctatgtagtgaattatgac
ttgcctaacgttgcagaatcttatgtacaccgtataggtcgtaccggtagagcaggtgct
agtggtctagcagtctctttctgtatgcttgaagagcgaccattcctaaaagatattgag
aaattgatacaacaacaaattcctgtaatagagaatcatgagtacccttttaaaatggaa
gacgctgcagagcctagtttgaaaaaacaaggtcaacgtggtcgtagaccacaacgtaaa
acgggatcaggtagtgggaagcctaaatctggcggatcaaaaaatactggtggcaataag
ccgagaagaagatattaa
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