Nonlabens ulvanivorans: R1T42_12820
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Entry
R1T42_12820 CDS
T09493
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nul
Nonlabens ulvanivorans
Pathway
nul03410
Base excision repair
nul03430
Mismatch repair
nul03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
R1T42_12820 (recJ)
03430 Mismatch repair
R1T42_12820 (recJ)
03440 Homologous recombination
R1T42_12820 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nul03400
]
R1T42_12820 (recJ)
DNA repair and recombination proteins [BR:
nul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
R1T42_12820 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
R1T42_12820 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
R1T42_12820 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
DUF3958
DUF6880
Motif
Other DBs
NCBI-ProteinID:
WOI22546
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Position
2832813..2834510
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AA seq
565 aa
AA seq
DB search
MRWTLKPQPDIATQEKLAQELGIDSFLAGLLVQRGVDAFAKAKSFFRPDLNELHDPFLMK
DMDVAVKRIQKAIGNNENILVYGDYDVDGTTSVALMSTFLLSFYDRVATYIPDRYGEGYG
VSYQGIDFAADNDFSLIIALDCGVKAIDKVAYASEKGIDFIICDHHRPGKQLPAAVAVLD
PKRNDCSYPFDELCGCGVGFKLCQALVEANDWDFDILIPYLDLVATAIGADIVPIVDENR
ILAYHGLNVINTSPRAGFKAIIHQLKKDTLTITDVVFIIAPRINAAGRMKHALHAVELMV
TDDFKEAQRIAAEIEEYNADRREADQSITEEAKQQIINNKGEELFTTVVFQEDWHKGVIG
IVASRLIETYYRPTLVFTKSGEYLAASARSVSGFDVYNALEQCSEFIEQFGGHKYAAGLT
LKPENYRSFKARFEEVVCATIEKQHLTPEIKIDAVLPLGNITPKFYRILQQMAPYGPSNM
RPVFMTEKVMDTGYGKCVGKSEDHLKIKVVKKQNDRHAIDAIGFNLGKKIDLIKNDDKFD
IAYTISENEWNGNVTLQLMLKDIKA
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgcgctggaccttaaaacctcaacccgatatagcaacacaagagaaactggctcaagag
ctaggtatagactcttttcttgctggtttgctggtgcaacgtggtgtggacgctttcgcg
aaagcgaaatcctttttcagaccagatcttaatgaattacatgatccttttttaatgaag
gatatggatgtggctgtaaaacgcatccaaaaagccatagggaacaatgagaatatatta
gtttatggggattatgacgttgacggaactactagtgttgcattaatgtctaccttttta
ttgagtttttatgatcgagtagctacttacataccagatcgatatggtgaaggttatgga
gtgagttatcaaggaatagattttgccgcagataatgatttttctctaattatagcactg
gattgtggtgtgaaagctattgataaagttgcttatgcaagtgaaaaaggcattgatttt
ataatttgtgaccaccatagacctggaaagcaattaccagcggctgttgctgttctagac
ccgaagcgtaatgattgttcttatccatttgatgagttgtgtggttgtggtgttggattt
aaattgtgtcaggcgctggtagaggcaaatgattgggattttgatattttaattccgtat
ttagatttagttgctacggctataggtgcagatatagttcctatagtagatgaaaataga
atattagcttatcacggattgaatgtgattaatacgagcccacgtgctggttttaaagca
atcattcatcaattaaagaaagatactttaacaatcactgatgttgtttttattatagca
ccacgcatcaatgcggctggtagaatgaaacacgctctacatgcggtggagttaatggtg
actgatgattttaaagaggcacaacgtattgccgcagaaattgaagagtataatgcagat
agacgagaggcagatcagtcgataacagaagaggcaaaacagcaaattattaataataaa
ggggaagaactttttactactgtagtctttcaggaagactggcacaaaggagttataggg
atagttgcgtctcgattaattgaaacttattacagacctactctagtctttacaaaaagc
ggtgagtatctagcagctagcgcacgtagtgtaagcggttttgatgtgtataacgcgctt
gagcaatgtagtgagtttatagagcagtttggtggtcataaatatgctgctggtttaaca
ttaaaacctgaaaattatcggtcttttaaggctcgatttgaagaggtagtttgtgctact
attgaaaagcaacacctaacaccagaaataaaaattgatgcggtattaccactgggaaat
ataacgccgaaattttatcgaattttacaacaaatggcaccatatgggccgagtaatatg
cgacctgtttttatgactgaaaaggttatggatacaggatatggtaagtgcgtagggaaa
tcagaagatcatttaaagatcaaagtggtaaaaaaacagaatgacagacatgccattgat
gctataggttttaatctgggtaaaaagattgaccttataaaaaacgatgacaaatttgat
attgcttataccattagtgagaacgaatggaatggtaatgttactttacaattaatgctt
aaagatattaaagcttaa
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