Nonlabens ulvanivorans: R1T42_13150
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Entry
R1T42_13150 CDS
T09493
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nul
Nonlabens ulvanivorans
Pathway
nul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R1T42_13150 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nul03400
]
R1T42_13150 (mfd)
Enzymes [BR:
nul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R1T42_13150 (mfd)
DNA repair and recombination proteins [BR:
nul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R1T42_13150 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
DUF1828
Motif
Other DBs
NCBI-ProteinID:
WOI22606
LinkDB
All DBs
Position
2905143..2908481
Genome browser
AA seq
1112 aa
AA seq
DB search
MSFNKILKQYAQAPQTQSLREVVSQSQGHTHLSGLQGSAFTIAASSIFDEVEKPFMVIAN
DKEQAAYILNDFEKMLGDDRVLFYPGSYRRPYQIEKTDNANVLLRAEVLNRINSRKKPAV
IVTYPNALFEKVVTRKELEKNTLKIAVGDQISIDFANEVLFEYEFKRVDFVTEPGEFSVR
GGILDVFSFSHDEPYRIEFFGNEIDTIRVFDVETQLSKEQIKKISIIPNVEHKKLEENRE
SFLQYLSNKTVIFAENVELLYSNLDTLFAKAEQAYSELQGEVRQLLPSEIFCDSSIIKKQ
LVKYNLIELTTQSGNIAYQTTPQPAFNKQFDLLVENLKENEENGYTSYLFCGTAQQAKRF
KDIFDDMGAQVQYETVVMTLFKGFIDHNLKIACYTDHQIFDRYHKFKLKNGYAKKQAITL
KELNTLEIGDYVTHIDHGIGKFGGLQKIDVNGTQQEAIKLVYGERDILYVSIHSLHKITR
YSSKDGKAPKVYKLGSPAWKKLKAKTKTKVKQIAFDLIQLYAKRRAKKGFQFEPDGYLQN
ELEASFIYEDTPDQSSATADVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAAVSGKQ
VAVLVPTTILAFQHAKTFKERLGNLPVTVDYLNRFRTAKERKGVLEGLANGQVDIVIGTH
QLVSKSIQFKDLGLLIIDEEQKFGVGVKDKLKTLKENIDTLTLTATPIPRTLQFSLMAAR
DLSVIKTAPPNRHPIESRVIRFSEETIRDAVSYEISRGGQVFFVHNRIENIKEVAGMIQR
SVPDARVGIGHGQMDGKKLEELMLSFMNGDFDVLVATTIIESGLDVPNANTIFINNANNF
GLSDLHQMRGRVGRSNKKAFCYFITPPYDMMTDDARKRIQAVETFSELGSGFNIAMKDLE
IRGTGDILGGEQSGFMNEIGFDTYQKILNEAIEELKENEFKDLYKEETVEKIHVTDVTID
TEFELLFPDDYINSITERLALYSKLNELKNEAELEVFKKDLEDRFGDLPDQAEDLLTSIK
LKWIAARMGLEKLIMKQDKLIGYFISDQQSDFYQSATFSKILQAVQGQPRVLRMKEKQTR
GGLRLLLTIDKVKTVDRAFDVLNAILPAVEKV
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgagttttaacaagattcttaagcaatatgcacaagccccacaaacgcaaagtttgcga
gaagtggtgtcccaatcccaaggtcatacacatttaagtggtttgcaaggtagtgcgttc
accatcgcagcgagctctatttttgatgaggtagaaaagcctttcatggtcattgcaaat
gataaagagcaagctgcctatattctcaatgactttgaaaaaatgttgggagatgatcga
gttcttttttatcccggaagttatagacgtccttatcaaatagaaaagaccgataatgca
aatgtgcttttacgtgccgaagtacttaatcgaatcaactctcgtaaaaagcctgcggta
attgtaacttatcctaatgcactttttgaaaaagttgttactcgcaaagaattagaaaag
aatactcttaaaattgccgtaggtgatcaaatttccattgattttgcaaatgaggtcctt
tttgagtacgaatttaaaagagttgattttgttacagagcctggagagttttcagtacgt
ggtggaattttagatgtgttctctttttcacacgatgagccttatcgtattgaatttttt
ggtaatgagattgataccattcgtgtgtttgatgtcgaaacacaattatccaaagagcaa
atcaaaaaaatctcaattatacctaatgttgagcataaaaagctagaggagaatcgagag
agctttttgcaatatttatctaataaaacggtgatttttgcagagaatgttgagttgcta
tatagtaatttagatactctttttgccaaggcagaacaggcgtatagcgagttgcagggt
gaagtcagacaactattaccttcagaaatattttgtgactcttccattattaaaaagcaa
cttgtaaaatataatcttattgaattaactactcaatctggtaatattgcttatcaaaca
acgcctcaaccagcatttaataagcaatttgatttactggttgagaaccttaaagagaat
gaggagaatggatatacctcatatcttttttgtggtacagcgcagcaggcaaaaagattt
aaggacatctttgatgatatgggagcgcaagtacagtatgagactgtggttatgactctt
tttaaaggttttattgatcataatttaaaaatagcttgttatacagatcatcaaattttt
gatagataccacaagttcaaactaaaaaatggatatgccaaaaagcaagccataacgctg
aaagaacttaacaccttagaaataggtgattatgtaacacacattgatcatggaattggg
aaatttggtgggctacagaaaatagatgtgaatggtactcaacaggaagctattaaattg
gtttatggcgagcgtgatattctatatgtgtccatacactctttacacaagataactaga
tattctagtaaagatggaaaagctcctaaagtatataaattaggtagtcctgcctggaaa
aagctaaaagcaaaaacaaaaacaaaggtgaagcaaatcgcctttgatttaatccaatta
tacgcaaaaagacgtgctaaaaaaggtttccaatttgagcccgatggataccttcaaaat
gaacttgaagctagttttatttatgaagacacaccagatcaaagttctgcaacagcagat
gtaaaagcagatatggaaagtgatcgacctatggatcgattagtttgcggtgatgttggt
tttggtaagacagaagtagcgattagagccgcctttaaagcagcagttagtggtaaacaa
gttgctgttttagtgcctacaacaattctcgcgtttcaacatgcaaaaacttttaaggag
cgattaggtaatttaccagtgactgtagattatctaaatagatttagaacggcaaaggag
cgtaaaggtgtgctagaaggtcttgcaaatggtcaggttgatatcgtgataggaactcat
caattagttagtaagtcgatacagtttaaggacctaggattactcattatagatgaggaa
caaaagtttggtgttggagtaaaagataaacttaagactcttaaagagaacatcgataca
ctcacgttaacagcaacgcccataccacgtacattacagttttcattgatggcggccaga
gacttaagtgttattaaaacggcaccacccaataggcatcctatagaatcgagagtgatt
cgattctcagaagaaaccattagagatgcggtgagttatgagatttctcgtggtggtcag
gtgttttttgtgcataaccgtattgaaaatattaaagaagtagctggtatgattcagcgc
tcagtaccagatgctagagtaggtataggacatggtcagatggatggtaaaaaacttgaa
gaattaatgttgtcttttatgaatggtgactttgatgttcttgttgcaaccacgattata
gaaagtggtttagatgttccgaatgcaaatactatttttataaataatgcaaataatttt
ggtctatcagacctgcatcaaatgcgtggacgtgtaggtcgtagtaataaaaaagccttt
tgttatttcatcacaccgccatatgatatgatgactgatgatgctcgcaaacgtatacaa
gcagtagagactttctcagaactaggtagtggttttaatatcgcaatgaaggatcttgag
atacgaggtactggagatattttaggtggtgaacaaagtggtttcatgaatgaaataggt
tttgatacgtatcaaaaaatattaaatgaggctattgaagagcttaaggaaaacgagttt
aaagatctatataaagaggaaactgtcgaaaaaattcacgttactgatgtcaccatagac
actgagtttgagttacttttcccagacgactatattaattctataacagagcgattagct
ttgtattctaaacttaacgaactcaaaaatgaggctgaattagaagtgtttaaaaaagat
ctagaagatcgttttggagatttgccagatcaagctgaagatctattaaccagtatcaaa
ttaaagtggatagcagcaagaatgggactcgaaaagctcattatgaagcaggataaactc
atcggttatttcatttctgatcagcaaagtgatttttatcaaagtgccacattctcaaaa
atactacaagcagtacaagggcaaccacgtgtgctgcgcatgaaagagaaacaaactaga
ggtggattaaggttattgcttaccatagacaaggtgaaaaccgttgatcgtgcttttgat
gtattaaatgctattctaccagctgtagaaaaagtataa
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