Nitrosomonas ureae: ATY38_10100
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Entry
ATY38_10100 CDS
T04188
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nur
Nitrosomonas ureae
Pathway
nur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATY38_10100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nur03019
]
ATY38_10100
Enzymes [BR:
nur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ATY38_10100
Messenger RNA biogenesis [BR:
nur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATY38_10100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
DRTGG
DUF3892
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALQ51534
UniProt:
A0A0S3AK96
LinkDB
All DBs
Position
2212929..2214344
Genome browser
AA seq
471 aa
AA seq
DB search
MSSNISFEQLGLSTDLLRAISEQGYTNPTPIQQQAIPIILKGFDVMGGAQTGTGKTAGFT
LPMLQKLESHANSSTSPAKHPTRALILVPTRELAIQVYESVRAYGKYVALKSAVIYGGVN
IDVQIAAIRSGVEILVATPGRLLDHLQQKNLILSKIEILILDEADRMLDMGFLPDIKQII
QMLPDQRQNLMFSATFSEEIKKLAGKILKSPILIEVAKQNSVSDLISHIVYSVESKNKQE
FLIDMIKKKNLQQVLIFTRTKHGADHLTQKLNSREILSSVIHGDRNQLQRTQALDNFKCG
LIRILVATDVAARGLDIEELTHVINFELPNNPEDYVHRIGRTGRAGAKGFAISFVSREET
ILLGGIERLLGIKIQVEESNFGLKSQQTELSNKTNSIEEQKKSRAFSFKKEPLSKRSKRI
EKIEDPLFSQPYISKCSDLISIQVGTGKSNKQYPSKTLPALFIPPVTSKQK
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtaatatctcatttgaacaactcggtttatcaactgatttgttgcgagctata
tctgaacaagggtatacaaatcccactccaattcaacaacaggctatacctataatcctg
aaaggttttgacgttatgggtggagctcagactggcacaggtaaaacagcgggttttact
cttcctatgttgcaaaaattagagagtcatgcgaatagtagtacatcacctgcaaaacat
ccaacacgcgcattgattttagtgccaaccagggagcttgcgatacaagtttacgagagc
gttagagcgtatggaaaatatgtggcactaaaatcagctgtgatttatggcggtgtaaat
atcgatgtgcagattgcagctatacgttctggcgtagaaatcctggtagcaacgccaggg
cgtttattggatcatcttcaacaaaaaaatttgatactttcaaaaattgaaatattaatt
cttgatgaagccgatcgaatgctggatatgggttttttgccagatataaagcaaatcatt
cagatgttacccgatcaacgacagaatttaatgttttccgcaacgttctcagaagaaatc
aagaaacttgcaggaaaaattttgaagagcccgatactgattgaagtggccaagcaaaac
tcagtcagtgatttgatttcacatatagtttattctgtagaatcaaaaaataagcaagaa
tttctaatcgatatgatcaagaaaaaaaacttgcaacaagtattgatttttacacgtact
aaacatggagcagatcatttgacacaaaaattaaatagtcgggagatcctgagttccgta
atacacggcgatagaaatcaactgcaacgaactcaagctttggataattttaaatgtggt
ttaatccgaatccttgttgcgactgatgttgcagcacgtggtcttgatattgaagaatta
actcatgtgattaattttgaactacctaataatcctgaagattacgtacatcgcattgga
agaacagggcgtgcgggagcgaaaggatttgcaatttcttttgttagcagagaagagact
attctattgggtggtatagaaagattattagggattaagattcaagtagaggaaagtaat
tttggattaaagagtcagcaaactgagctttcaaataaaacaaactcaattgaagagcaa
aagaaatcgagagctttttcctttaagaaagagcccctatcgaagaggtcaaaaaggatt
gagaaaatagaagacccgttgttttcacagccctatatatcaaaatgttcagatttgata
tcaattcaagtaggaactggtaagtctaataagcaatatcctagtaaaacattacccgct
ctgtttattccacctgtaaccagcaaacaaaaataa
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