Candidatus Nitrohelix vancouverensis: G3M78_00825
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Entry
G3M78_00825 CDS
T09852
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nva
Candidatus Nitrohelix vancouverensis
Pathway
nva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3M78_00825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nva03019
]
G3M78_00825
Enzymes [BR:
nva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G3M78_00825
Messenger RNA biogenesis [BR:
nva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G3M78_00825
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
Cas3-like_C_2
Sacchrp_dh_NADP
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
QPJ64022
UniProt:
A0A7T0C015
LinkDB
All DBs
Position
160021..161379
Genome browser
AA seq
452 aa
AA seq
DB search
MLASPPTPSREEFQLLNLIAPLCRAVREEKYSQPTPIQKQAIPYLLEGRDLMGCAQTGTG
KTGAFALPLLQRLSERNKPPRAKGVSALILTPTRELALQISQSFQIYGRYLKIKHAVVFG
GSSYKVQIRSLARGVDVLVATPGRLLDLIEQGYVRLDEVSIFVLDEADRMLDMGFLPNIR
QFLQMMPADRQSMLFSATLPNEIARLAKQFLNDPVTVSVTPQSSTAEKIDQRVLFVDREN
KSDLLESVLQDPDIQRVLIFTRTRHGANKIAEKLKKIRIKAEAIHSNKSQAARLDALKKF
RSGNARVLVATDIASRGLDVDGITHVINYELPNEPESYVHRIGRTARAGKEGKAISFCDA
GERGFLRNIERAIKQNVAVVDDHPFHSITVANQKVRNASGDKKSFGKRYSGKPSSTQDAR
RPSRRPKGKFNGSAMSFKNKKPRRATKTARQG
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgctagcatcaccccctactccttctcgcgaggagttccaattgttgaatctaattgcg
cctttgtgtcgcgccgttcgcgaggaaaaatactcacaacccacacccatccagaaacaa
gcgattccttaccttttagaaggaagagacttgatgggttgcgcacaaactggaaccggt
aagacgggcgcttttgccctgccgctcctgcaacgcttatcagaacgcaacaagcctccg
cgagcgaaaggagtcagcgcgctgatactgacacccacccgggaattggctcttcaaatc
agccagagcttccagatctacggacgctatctgaaaatcaaacacgccgtcgttttcggc
ggttcgagttataaagtgcaaattcgctctcttgcccgcggtgtcgatgttctggtcgcc
actccgggacgtttgctggatttgatcgagcaaggttatgtgcgtttggacgaagtcagc
attttcgttctcgatgaagcggatcgcatgctggacatgggctttctgcccaatattcgc
cagtttttacaaatgatgccggcggatcgacaatcgatgttgttctccgcgaccctgcca
aacgaaattgcgcgactcgcaaaacagtttttaaacgatcccgtcaccgtgagcgtcact
ccgcagtccagcacggcggaaaaaatcgaccagcgcgttttgttcgtcgaccgggaaaac
aaaagcgatctgctcgaatccgtattgcaggacccggacattcagcgcgttctgatcttc
acgcggactcgacatggcgcgaacaaaatcgcggaaaaactgaagaaaattcgcatcaag
gcggaagccattcacagcaacaaatcgcaagccgcccgtctcgatgccttgaaaaagttt
cgttcgggtaacgcgcgcgttttggtcgctacggatatcgcatcgcgcggcctcgacgtt
gacggcatcacgcatgtcatcaactacgagcttcccaacgaaccggaaagctatgtgcat
cgcattggacgtacggcgcgcgcaggcaaagagggaaaagccatttccttttgcgacgcc
ggcgaacgcggattcttgagaaacattgaacgcgcgatcaagcagaatgtcgcggttgtg
gacgatcatcccttccattccattacggttgcgaaccagaaagtgcgtaacgcttccggc
gacaaaaagtcgtttggaaaacgctactcagggaagccgtcttcaacgcaggatgcgcgc
cgcccgagccgacgccccaaaggcaaattcaacggcagcgccatgagcttcaaaaacaaa
aaaccccgaagagcgactaaaaccgcgcgacagggttaa
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