Candidatus Nitrohelix vancouverensis: G3M78_05405
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Entry
G3M78_05405 CDS
T09852
Symbol
orn
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
nva
Candidatus Nitrohelix vancouverensis
Pathway
nva03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
nva00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
G3M78_05405 (orn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nva03019
]
G3M78_05405 (orn)
03009 Ribosome biogenesis [BR:
nva03009
]
G3M78_05405 (orn)
Messenger RNA biogenesis [BR:
nva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G3M78_05405 (orn)
Ribosome biogenesis [BR:
nva03009
]
Eukaryotic type
Pre-60S particles
RNases
G3M78_05405 (orn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DUF3271
DNA_pol_E_B
RPC3_helical
Motif
Other DBs
NCBI-ProteinID:
QPJ64851
UniProt:
A0A7T0C1K5
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All DBs
Position
1133607..1134200
Genome browser
AA seq
197 aa
AA seq
DB search
MGKKSSNNMVWMDLEMTGLDVEKEVIIEIATIITDSELNVLAKAPCMAIHQPDEILERMD
EWNTRHHNASGLVQRVRQSHITVEEAERQTLRVIKEFCPPNAVPLCGNSVSQDRKFLEKY
MKELYAHLHYRSIDVTSIKEVIRRWYPEGPQFPKKSNAHMASVDIQESLDELIFYRKHYF
SDEVMNAVNVGRDHSSS
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
ttgggtaagaaatcctccaacaatatggtctggatggatctggaaatgacagggctggac
gtcgagaaagaagtcatcattgaaatcgcaacgatcatcaccgatagcgaattgaatgtg
ctggccaaggcgccgtgcatggcgatccaccagccggatgagattctggagcgcatggac
gaatggaacactcgccaccacaatgcgtcgggactggttcaacgagtccgacaatcccat
atcacagtcgaagaggcggaacggcagaccttgagagtcatcaaggaattctgccctccc
aacgccgtgcccctgtgcggcaattcggtgtcgcaggatcgtaaatttcttgaaaaatac
atgaaagaattatacgctcatctgcattatcgaagcatcgacgtcacgtcgatcaaggaa
gtgattcgccgctggtatcctgaaggtccgcagttcccaaagaaaagcaacgctcatatg
gcgagcgtggatattcaggaatctctggatgaattgattttttatcgtaaacattatttt
tccgacgaagtgatgaacgctgtcaacgtcggtcgagatcattcaagttcatga
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