Candidatus Nitrohelix vancouverensis: G3M78_13115
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Entry
G3M78_13115 CDS
T09852
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nva
Candidatus Nitrohelix vancouverensis
Pathway
nva03030
DNA replication
nva03430
Mismatch repair
nva03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G3M78_13115 (dnaE)
03430 Mismatch repair
G3M78_13115 (dnaE)
03440 Homologous recombination
G3M78_13115 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nva03032
]
G3M78_13115 (dnaE)
03400 DNA repair and recombination proteins [BR:
nva03400
]
G3M78_13115 (dnaE)
Enzymes [BR:
nva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
G3M78_13115 (dnaE)
DNA replication proteins [BR:
nva03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
G3M78_13115 (dnaE)
DNA repair and recombination proteins [BR:
nva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
G3M78_13115 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QPJ66282
UniProt:
A0A7T0C4A4
LinkDB
All DBs
Position
complement(2843869..2847324)
Genome browser
AA seq
1151 aa
AA seq
DB search
MPLTNFVHLHLHTSYSLLDSSLRHDALFKRAAEYNMPAVAMTDHGNLFGAVEFYNAGKKH
GVKPIIGCEVYVAPESRLEKSSKHDLRDASYHLILLAETDQGYKNLLKLVTAGYLEGFYY
KPRIDKEMLAEYSEGLIALSSCGRGEVAHNVYKENIPRAIKVASQYRDIMGENNFFLELQ
YHKLEHQERINKELVQIGDKLSIPVVATNNCHYLDRKDFRAHQILLCLQTGKTISDPYRM
RYDTEEMYFKSTEEMAAIFKHVPDAIENTVKIAERCNLHLDFDQINLPDYPIPETYTLEG
YLEEMTRKGLEDRLEVMRRCGQEPDEERYKERLEEELGIIKRMGYPGYFLIVWDFIRHAR
ERKIPVGPGRGSAAGSLVAYALTITDLDPLPYGLMFERFLNPERVSMPDIDIDFCMDGRE
EVIQYVTEKYGGSQNVTQIITFGSMNAKGVLRDVGRVLDMPYGEVDRIAKLVPDRLNITL
DAAFKEENKFGELRKESEHVEELLEIAQNLEGLPRHCSTHAAGVVISSKPLTQFLPLYKG
SNDEVVTQFSMGNVEKLGLLKMDFLGLRTLTVIDNALRLIRESTSDDIDISLIPTDDKKT
YELLCSARTLGVFQLESGGMRDLLKKMKPDSFEDIIALLALYRPGPLESGMVDDYVKRKH
GVMAAQYELPQLEGILKETHGVILYQEQVMKIASVLSGYSLGEADLLRRAMGKKKAEEMA
AQRQRFLEGSHSKSIPEDKAKKIFDLMEKFAGYGFNKSHSAAYALVSYQTAYLKAHYPLQ
FFGALITSDMDNTDKVIRYINDCREMKIEVRPPDINESSWSFSIANGKLLFGLGAIKNVG
SAAIESIIGVRKTAERFSSLKDFCEQIDLRAANKRVIESLIKSGACDSLGQSRAYMIKHL
PEAMEMAQAKQRDRLMGQSNMFDAFEDEASAPDEPDNEERLSDEDRLRYEKETIGFYISG
HPLNKYEKEIHWFSDAASATISDHKGQTVHMIGLPAKVTVKNTKKGDKMAIVLLEDLQGS
VEAIIWPDLYVSVEQLLAEDAPVWIRGKVDAEGNTPKLIVEQICSLDDVKQNWKGTIHIH
IRTPGLERAMMLSVRDALEKNRGNNEVEIHFIFPDNKQRTVTVGPHLKARASDEIVQEIE
EILGEHSIHFE
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgccccttacaaatttcgtccaccttcatctccacacctcttacagtcttctcgattct
tccctaagacacgatgccctgttcaaacgagcggcggagtacaacatgcccgccgtcgcc
atgacggatcacgggaatttgttcggcgcggtggagttttacaatgcggggaaaaagcac
ggcgtgaaaccgatcattggttgcgaagtctatgtggcgccggaaagtcgtctcgaaaaa
agttcaaagcacgatcttcgggacgcatcgtatcacctgatattgctggctgaaacggat
cagggttacaaaaatctgctgaaactggtcacagcgggctatctggaaggtttctattac
aagccccgaatcgacaaagaaatgcttgccgaatactccgaaggcctgatcgccctcagc
tcctgcggtcgcggcgaggtggcgcataacgtgtacaaggaaaatatcccgcgcgcgatc
aaggtggcgtcgcaataccgggatatcatgggcgaaaataatttctttctggaattgcag
tatcacaaactcgaacatcaggaacggatcaataaggaattggttcagattggcgacaag
ctctccattcccgttgtggcgacgaacaattgccattacctcgacagaaaagactttcgg
gcgcaccagatccttctgtgtttgcagacggggaaaacgatcagcgatccctaccgaatg
cgctacgacaccgaagagatgtatttcaagtccaccgaagagatggcggcgattttcaaa
cacgtccccgacgcgatagaaaatacggtgaaaatcgccgagcgttgcaatttgcatctg
gattttgaccagatcaatttaccggactacccgatccccgagacctatacgctggaaggc
tatctggaggaaatgacgcggaaagggctggaagatcgactggaagtgatgcggcgctgt
ggtcaggagcctgatgaagaacgctataaagagcgacttgaagaagaactgggcatcatc
aagcgcatgggctatccgggatactttctcatcgtctgggatttcatacgccacgcgcgc
gaacgaaaaattcctgtggggccggggcgcggttctgcggcgggcagtctggtggcttac
gcgttgaccatcaccgatctggaccctctgccttacggcttgatgtttgagcggttcttg
aacccggagcgggtcagcatgccggatatcgacatcgatttttgtatggacgggcgcgaa
gaggttattcagtacgttacggagaaatacggcggttcgcagaacgtcacgcagatcatc
acctttggaagcatgaacgccaaaggcgtattgcgcgatgtgggccgtgtgctggatatg
ccctatggcgaagtcgaccggatcgccaagctggtgccggatcggctcaacatcaccctg
gacgcggcgtttaaggaagagaacaagtttggggaactgcgcaaggaaagcgaacatgta
gaggaacttcttgaaatcgctcaaaatcttgaaggccttcctcgccattgttcgacccat
gccgcgggcgtggtgatctcttccaaaccgctgacacaatttctcccgctctataaaggc
agtaatgatgaagtcgtgacccagttctccatgggcaatgtggagaaactgggcctgctc
aagatggacttcctcggcctgcgcaccttgacggtgatcgacaatgccctgcgcctcatc
cgggagtcgacctccgacgatatcgacatcagcctgattcccacggacgataaaaaaact
tacgaactgttgtgttcagcccgcacccttggcgtctttcaactggaaagcggcggtatg
cgcgatctcttgaagaagatgaagccggactcttttgaagacatcatcgccctgcttgcc
ctgtatcgtcccggtccgctggaaagcggcatggtggacgattatgtgaaacgcaaacat
ggggtgatggcggcgcaatacgaattgccgcaactcgaaggcattttgaaagaaacgcac
ggcgtcattctgtatcaggagcaggtcatgaaaatcgccagcgtgttgtccggctacagt
ctgggcgaggcggatttactgcgacgcgcgatgggtaagaagaaggcggaggaaatggcg
gctcagcggcaacgttttctcgaaggctcgcattccaaatcgatcccagaagacaaggcg
aagaaaatttttgacctgatggaaaagttcgcgggctacggatttaacaaatcccatagc
gccgcttatgcgctggtttcctaccagaccgcttacctgaaagcgcattaccccctgcag
tttttcggcgccctcatcaccagcgatatggacaacaccgacaaggtgattcgctatatc
aacgattgccgggaaatgaaaatcgaagtgcggccgcccgacatcaacgagagttcctgg
agtttttccattgcgaacgggaaattattatttggtttgggcgctattaaaaacgtcggc
tcggcggcgattgaatccatcataggggttcgcaagacggcggagcgtttttcttccctg
aaggatttctgcgagcagatcgatttgcgcgccgcgaacaagcgggtgatcgaaagtctg
atcaaaagcggagcctgcgattcactcgggcaaagccgcgcgtacatgatcaaacatctt
cccgaagcgatggagatggcccaggcaaagcagagggatcgcttgatggggcaaagtaat
atgttcgacgcatttgaagacgaagcgtcggctcccgatgagccggataacgaggaacgc
ctgagcgatgaagatcgtttgcgttacgaaaaggagacgatcggtttttatatttccggt
catcctttgaataagtatgaaaaggaaatccactggttttcagacgccgcatccgccacg
atcagcgaccacaagggacagaccgttcacatgatcggactgcccgcaaaagtgaccgtc
aagaacacaaagaagggcgataaaatggctatcgttcttctggaagatttacaaggttcg
gtcgaggcgatcatctggcctgacttatatgtctccgttgaacaattgctggctgaagat
gcgccggtctggattcgcggcaaagtcgatgcggagggcaacacgccgaagctgatcgtt
gagcagatttgttctctggatgatgtgaaacagaactggaagggaacgattcatattcat
attcgaactcccggactggaaagggcgatgatgctgtctgttcgcgatgcgcttgaaaaa
aatcggggcaacaatgaagtggaaatccattttatcttcccagacaacaagcaacggacg
gtgacggttggcccgcatctgaaagcgcgcgcatcggatgaaatcgttcaggaaatcgaa
gaaattctaggcgaacactccattcattttgagtga
DBGET
integrated database retrieval system
