Candidatus Nitrohelix vancouverensis: G3M78_13680
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Entry
G3M78_13680 CDS
T09852
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
nva
Candidatus Nitrohelix vancouverensis
Brite
KEGG Orthology (KO) [BR:
nva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nva03016
]
G3M78_13680 (truB)
Enzymes [BR:
nva01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
G3M78_13680 (truB)
Transfer RNA biogenesis [BR:
nva03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
G3M78_13680 (truB)
Prokaryotic type
G3M78_13680 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB_C
Motif
Other DBs
NCBI-ProteinID:
QPJ66388
UniProt:
A0A7T0C4J6
LinkDB
All DBs
Position
2954952..2955893
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AA seq
313 aa
AA seq
DB search
MDCTLNKVVNLYKPAGPTSFDMVCKVKRILGVKKAGHIGTLDPDAEGMLPICLNRSTRII
PFLTAQLKVYEAQMTLGSATDTQDSTGKTIAEGSVEGISREQVLQVLNEFRGPQNQVPPM
FSAKKKNGIPLYKLARNGITIERKAVPIHIHSIEMIGMEDNRVDFVVQCSSGTYIRTLCH
DMGERLGCYAHMSRLVRTEVGIFNRDTSLTLENLQAAVDDGSISSKLFSQEEALQFLPAI
QIKSDHAAAVGNGKALTRQSIESIAHPVETGQHYRVSDDAGLTLAVVESAITEEEYARLE
PNEIAFKLKRVLM
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atggactgcacactgaataaggtcgtcaatctctacaaaccagccggtccgacctccttt
gacatggtttgcaaggtcaaacgcattctgggggtaaaaaaagcgggccatattggcact
ctcgaccccgatgcggaaggcatgttgcccatctgtctgaaccgatccacccggatcatt
ccgttccttaccgcccagctcaaggtctatgaagcccagatgaccctgggctctgccacg
gacactcaggactccacaggaaagaccattgcagaaggttccgttgagggcatttccaga
gaacaggttttacaagttctgaatgaattccgaggcccgcaaaatcaagtacccccaatg
ttttcagctaaaaagaaaaacggaattcctctttacaaattggccagaaatggtattact
atcgaacgaaaagccgttcccatccatatccattctatagaaatgatcggaatggaggat
aaccgcgttgatttcgtggtacagtgttcgtctggaacttatatacggaccctgtgtcac
gatatgggggaacgtttgggctgttatgctcatatgtcgcgactggtaagaaccgaggta
ggcatatttaatagagacacctctttgacgcttgagaacctgcaagccgccgtcgacgat
ggaagcatcagctctaaactattttcacaagaagaggcgttgcagtttttacccgcaatt
cagatcaaatccgatcacgccgccgcagtgggaaacggcaaagcgcttacccggcagagc
atcgaatccattgcacatcctgttgaaacaggacaacattaccgggtttccgacgacgca
ggattgacgctggctgtcgtcgaatcggcgatcacggaagaagagtatgcgcggttggaa
ccgaatgaaatcgccttcaaattaaaacgcgtattaatgtaa
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