Candidatus Nitrohelix vancouverensis: G3M78_13690
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Entry
G3M78_13690 CDS
T09852
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
nva
Candidatus Nitrohelix vancouverensis
Pathway
nva03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nva00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3M78_13690 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nva03019
]
G3M78_13690 (pnp)
03016 Transfer RNA biogenesis [BR:
nva03016
]
G3M78_13690 (pnp)
Enzymes [BR:
nva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
G3M78_13690 (pnp)
Messenger RNA biogenesis [BR:
nva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
G3M78_13690 (pnp)
Transfer RNA biogenesis [BR:
nva03016
]
Prokaryotic type
tRNA degradation factors
G3M78_13690 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
DUF5813
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
QPJ66390
UniProt:
A0A7T0G4G3
LinkDB
All DBs
Position
2956363..2958501
Genome browser
AA seq
712 aa
AA seq
DB search
MEKVEIEIDGKTISIEAGDLARQAGGAVVIRTGDTMVLVTSTMAKSAREGADFFPLTVDY
REKTYAAGKIPGGFFKREARPSDLETLICRLIDRPHRPMFPDGFRNETQIICMPLSHDLK
NPADVIAITGASASLMISDIPFTTPLAGARVGRIDEKFVFNPTVEETEQSDLNLIMAGTA
DAIVMVEAGSKGLSEQVMMDALEFGHERIKKLVEIQVKLRELLGKEKVPFEAPPVDQELQ
KKVRERGLAELEASMSITGKHERTDKIKAIDKAIQEELNPEQDPAIKAALGSLFHDLEKE
VVRNMILDKKLRVDGRSLDQVRPISIMVGYLPRTHGSAIFTRGETQALVTTTLGTSSDEQ
RMDTLEFRGTRSFMLHYNFPPFCTGETKFVSGPGRREIGHGMLAERALTPVLPGKDVFPY
TIRIVSEILESNGSSSMASVCGGALSLMDAGVPIKAPVAGIAMGLIKEGDRTAILSDILG
SEDHLGDMDFKVAGTKDGITALQMDIKIDGLSKEIMAQALQQAKEGRLHILGEMDKALES
PRQEMSRYAPRIVTLTVPKDKIRDVIGPGGKVIREIIEKTGVSIDINDDGLVSIASADED
AAKAAVDYIERLVQEVEIGRIYLGKVKKIVDFGAFVEILPGTDGLVHISQICDRRIRSVS
DEIQEGDEINVKVIDIDSQGKVKLSRKEALREKAGDKAASEKAGEKAGEPAV
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagttgaaatagaaattgacgggaaaactatatctatagaagctggcgatctc
gccagacaagcaggtggcgccgtcgtcattcgaaccggagacaccatggtgctggttacc
tccaccatggccaagagcgcccgggaaggagcggatttctttccgctgaccgtagactat
cgagaaaaaacttacgccgcaggaaaaattcccggcggcttcttcaaacgcgaagcgcga
cccagcgatctcgaaacgctgatttgtcgattgatcgaccgaccgcatcgtcccatgttc
cccgacggtttccgcaatgaaacgcagatcatctgcatgcctctgtcgcatgacttgaaa
aatccggcggacgtaatcgccatcaccggcgcctcggcgtctctgatgatttccgacatt
cctttcacgacccctctggcgggcgcgcgcgttggacgaattgatgaaaaattcgtattc
aatcctacggttgaagaaaccgaacaaagcgacctcaacctcatcatggccggcaccgca
gacgccatcgtgatggtcgaagccggttccaaaggactcagcgagcaagtcatgatggac
gcgctggaattcggacacgaacgaatcaaaaagctggtcgaaatacaggtcaaactccgc
gaattgctcggcaaggaaaaagttcctttcgaagcgcctccggtcgatcaggagttgcaa
aagaaagttcgcgaacgcggattggcggaactcgaagcctcgatgtctatcaccggcaag
catgaacgaaccgacaagatcaaggcaatcgataaagccattcaggaagaattgaacccg
gagcaggatccagccatcaaagccgctctcggttccttattccacgatctcgaaaaagaa
gtcgtgcgcaatatgattctggataagaaactgcgcgtcgacggtcgaagtctcgatcag
gttcgccccatttcgatcatggttggatacctgccgcgaacgcacggttccgccatcttc
actcgcggcgaaacccaggcgctggtcaccaccacgctgggcacctcttcggacgagcaa
cgcatggacacgctggagttccgcggaacccgctccttcatgttgcattataactttccg
ccattctgtacgggcgagacgaaattcgtttccggccccggacgacgggagatcggtcac
ggcatgctcgcagaacgcgcgctcaccccggtgcttcccggcaaggacgtatttccctac
accatccgcatcgtatccgagattctcgaatcgaacggctcttcctcgatggcttcggtc
tgcggcggcgccttgtcgctgatggatgcaggcgtgccgatcaaggctccggttgcgggt
attgcaatgggtctgatcaaagaaggcgaccgaacggcgatcctgtccgacatcctcgga
tcggaagatcatttgggcgatatggatttcaaggttgcaggcacgaaagacggtatcacc
gctctgcaaatggacatcaagattgacggactgtccaaggaaatcatggcgcaggccttg
caacaagctaaagaaggtcgtctgcacatcctcggcgaaatggacaaggctctcgaatcg
cctcgtcaggaaatgtctcgttacgcgccgcgtatcgttaccctgacggtgccgaaagac
aaaatccgcgacgtcattggaccgggcggaaaagtcattcgcgaaatcatcgagaaaacc
ggcgtcagcatcgacatcaacgacgacggtctggtctccatcgcatctgcggatgaggat
gcggccaaagccgcggtcgattatatcgaacgtctggttcaggaagtcgagatcggtcgc
atttatcttggcaaagtgaagaagatcgtggattttggcgccttcgtggaaatcctcccc
ggcaccgacggtctggttcatatctctcaaatctgcgaccgccgaatccgaagcgtgagc
gacgagattcaggaaggcgatgagatcaacgtcaaagtgatcgacatcgattcacagggc
aaagtcaagctgagccgcaaagaagccttgcgggaaaaagctggcgataaagccgctagt
gaaaaggccggagaaaaagcaggcgaaccggcagtctga
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