Candidatus Nitrohelix vancouverensis: G3M78_14085
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Entry
G3M78_14085 CDS
T09852
Name
(GenBank) RNA polymerase sigma factor RpoD/SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
nva
Candidatus Nitrohelix vancouverensis
Pathway
nva02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nva00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G3M78_14085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nva03021
]
G3M78_14085
Transcription machinery [BR:
nva03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G3M78_14085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
GerE
KORA
Sigma70_r4_2
CutA1
HTH_Tnp_ISL3
UBA_2
Motif
Other DBs
NCBI-ProteinID:
QPJ66465
UniProt:
A0A7T0G4I7
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All DBs
Position
3030452..3031321
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AA seq
289 aa
AA seq
DB search
MTPKSPGKKTKKKSQLSGADALGRYMNDISRIQPLKREEEIALALKASDNNVEALQELIR
RNLKYVVSVANKYRGFGMSIQDLIEEGNIGLVQAAKRFDPDRKVRFITYAVWWIRQAILH
ALADQAHTVRIPVKQAGKMSKIGRSIKGLTQSLDREPTQTELARDMGLKEEEIENILRAY
RTGVSLDSPLKGDVETPYIDLLESADAIPFDDQIMKDTLRDKIDVLLKDLSEREETILRL
RFGFNGDSKTLEEIGLELGLSRERVRQIEKKAKNKLKLKSKSLGIEDQD
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgaccccaaagtcaccgggtaaaaaaactaaaaagaaatctcaactctcaggagccgat
gcgctgggccgatacatgaacgatatcagccgaatccaacctctcaagagagaggaagaa
atcgctctggccctgaaagcatcggacaacaacgtcgaagccctgcaggaactcattcgc
aggaacctgaaatacgtcgtcagtgtcgcaaacaagtaccgtggctttggcatgtctatt
caagacctgatagaagaaggcaacattggactggtgcaggccgcaaaacgctttgacccg
gaccgcaaggtccgcttcatcacctacgccgtctggtggattcgccaggcaatcctgcac
gctctggccgaccaggcccacaccgtcagaatccccgtgaaacaggcggggaaaatgtcc
aaaatcggcagatccatcaaaggcctcacgcaatcgctggaccgggaaccgacgcaaaca
gaacttgccagagacatgggactcaaggaagaagagatcgaaaatatcctgcgcgcctac
cgcaccggggtctcgctcgacagcccgctcaaaggcgacgttgaaacgccgtatatcgac
ctgctcgaaagcgccgacgcgattcctttcgacgaccagatcatgaaggacaccctccgc
gataaaatcgacgtcctcctgaaagacctcagcgaacgggaagaaacgattttacgcctt
cgcttcgggttcaatggagactccaaaactctggaagaaattggcctggaactggggcta
tccagagaacgggttcgccagattgagaaaaaagcgaagaataaattaaaactcaaatcc
aagtcgctgggaatcgaagaccaggactga
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