Candidatus Nitrohelix vancouverensis: G3M78_14135
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Entry
G3M78_14135 CDS
T09852
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nva
Candidatus Nitrohelix vancouverensis
Brite
KEGG Orthology (KO) [BR:
nva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nva03016
]
G3M78_14135
Enzymes [BR:
nva01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
G3M78_14135
Transfer RNA biogenesis [BR:
nva03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
G3M78_14135
Prokaryotic type
tRNA splicing ligases
G3M78_14135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QPJ66473
UniProt:
A0A7T0C4S8
LinkDB
All DBs
Position
complement(3041892..3043103)
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AA seq
403 aa
AA seq
DB search
MEKAVKQVIQQGRVPVKIWTDDVDSGAMEQLINMSKLPEGIVHQWIAVMPDVHWGMGATI
GSVIPTIDAIVPAAVGVDIGCGMMAVETNLSSQDLPDSLREIRHSIERDIPLGAGGAHRN
VPVDKFPWLDEALRSMSLTFSNLKGIGDKAKSKRWAQQMGTLGSGNHFIEICLDKEDRVW
FMLHSGSRGIGNMIGMHFIAQAKKEMEKQGARLPDKNLSYFTKDSAKFAEYVNAIAWAQD
YASENRKAMMASIVKNVKHAIPKLETRGENINCHHNYVSVERHYDKEVYVTRKGAIRARK
GEMGIIPGSMGTRSYIVRGKGNPESFESCSHGAGRTMSRTAARKRFSEKDLAASMERIEY
NHRKSIIDEIPSAYKDIDQVMAAQTDLVDIVHELRQVVSIKGD
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagcagtgaagcaggtcattcaacaaggtcgggttccggtgaaaatctggaca
gacgacgtggattcgggcgcgatggaacaattgatcaatatgtccaaattgcctgaaggc
atcgtgcatcaatggatcgcggtcatgccggacgtgcattggggcatgggtgcgaccatc
ggctcggtgatccccactatcgacgccattgttcctgcggcggtgggtgtggacatcggc
tgtggcatgatggcggtggagacgaatctcagttctcaggatttgccagattccctgcgc
gagattcgtcattctattgaacgggatattcctcttggcgcgggcggcgcgcaccgaaat
gttcccgtggataaattcccctggctggatgaggcgctgaggtccatgagcctgactttt
tcaaatttgaaagggattggcgataaagcgaagtcgaaacgctgggcgcaacaaatgggc
acgctgggttcgggcaaccatttcatagaaatttgtctggataaagaagatcgtgtctgg
ttcatgttgcactccggcagtcggggtatcggcaatatgatcggcatgcacttcatcgct
caagctaaaaaagaaatggagaaacagggcgcgcgtctgccggataagaacctgtcctat
ttcacgaaagattccgcgaagtttgcggaatacgttaacgccatcgcctgggcgcaggac
tatgccagcgagaatcggaaggcgatgatggcgtcgattgtgaaaaatgtgaaacacgca
atccccaagctggagacgcgtggcgaaaacatcaattgccatcataactacgtgtctgtt
gagcggcattatgacaaagaagtgtatgtgacgcgcaaaggagcgattcgagcgcgcaag
ggggaaatgggcatcatccccggttcgatggggacccgttcctatattgtgcgcggcaag
ggcaatcccgaatccttcgaaagttgttcccacggggcagggcgaacgatgagccgaacc
gccgcgcgcaaacgtttttcagagaaagaccttgcggccagcatggagcgcatcgaatac
aatcaccgcaaatccatcattgacgaaatcccttcagcctataaggacatcgatcaggtc
atggccgcgcagaccgatctggtggatatcgttcatgaattgcgccaggtcgtttccatc
aagggcgactag
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