Candidatus Nitrohelix vancouverensis: G3M78_15220
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Entry
G3M78_15220 CDS
T09852
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nva
Candidatus Nitrohelix vancouverensis
Pathway
nva02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nva00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G3M78_15220 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nva03021
]
G3M78_15220 (rpoD)
Transcription machinery [BR:
nva03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G3M78_15220 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QPJ66679
UniProt:
A0A7T0G4S6
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All DBs
Position
3274844..3276616
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AA seq
590 aa
AA seq
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MANDNKITEVAEINQLISQGKEKGYLTYEEVNDVLPANVVAPEQIDDLMHLFGENDIVIV
DNAAKGEKLIASKEGDSDDDDQDSSSDDEVATKTDSANIDDPVRMYLREMGTISLLTREG
EVTIAKLIEEGQNEVLSAVANCSITVREIEALGEQVKTGEIGIFDIIKAVEAEEGKVVSD
KDEIKKFQKTVRSIKTQSQKLNKVLERLGAARISQATKATWDKKLVEQQEAMEQLIHETN
LSNDVMDGIIEKIYEVAAQFREASKQERQLEKELGQSLADIKKLSNNWTKKKSYKTKKGK
LITKAQYENHIKMAQSGRRKVKKIEKETSTSKDQLLATVRAIARGRVKDKTAKRELAEAN
LRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAI
ADQARTIRIPVHMIETINKLIRVSRHLVQELGREPTPEEIAKKMALPVEKVRKVLKIAKE
PISLETPIGEEENSHLGDFIEDKKIMSPIDAVVKKNLKDQTLKVLSTLASREEKVLRKRF
GIGLDSEHTLEEVGQDFSVTRERIRQIEAKALRKLRHPSRSKKLRSFLEG
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacgataacaagatcacagaggtcgcagaaatcaatcaactgatttcgcaaggg
aaggaaaaaggctacctgacgtatgaggaagtgaacgacgtgcttcccgccaacgtggtg
gctccagagcagatcgacgacctgatgcacttgtttggagagaacgatattgtcatcgta
gacaacgccgcgaaaggcgaaaaactgatcgcctcgaaagaaggcgacagcgacgacgac
gatcaggattcctcctccgacgacgaagtcgcaactaaaaccgattctgctaatatcgac
gatcccgtccgtatgtacctgcgcgagatgggcaccatttccctgctcacccgcgaaggc
gaagtcaccatcgccaagctgatcgaagaagggcaaaacgaagtgctttccgccgtcgcc
aactgttccatcaccgtccgagaaatcgaagcgctcggcgaacaggtcaaaaccggcgag
atcggcatttttgatatcatcaaagccgtcgaagctgaagagggaaaagtcgtctccgat
aaagacgagatcaagaaatttcagaaaaccgttcgcagtatcaaaacccagagccagaaa
ctcaacaaggttcttgaacgactcggcgccgcgcgaatttcacaagcaaccaaagccacc
tgggacaagaagctggtagaacaacaggaagctatggaacagctcatccacgaaaccaac
ctcagcaacgacgtgatggacggcatcatcgaaaaaatctacgaagtcgccgctcagttc
cgcgaagccagcaaacaggaacgccagctcgaaaaagaactcggtcaatccctggcagac
atcaaaaaactgtccaacaactggaccaaaaagaaatcctacaagaccaaaaaaggtaaa
ttgatcaccaaagcgcagtatgagaaccacatcaaaatggcgcaaagcggtcgacgcaag
gtgaagaaaatcgaaaaagaaacctccacctccaaagaccaactgctggcgacagttcgc
gccatcgcccgcggtcgcgttaaagataaaaccgcgaaacgcgaactggccgaagcgaac
ctgcgtctcgtcgtcagcatcgcaaaaaaatacaccaaccgcggcctgcaatttctcgac
ctcattcaggaaggcaacatcggcctgatgaaagccgtcgacaaatttgaataccgacgc
ggctacaagttcagcacctacgccacctggtggattcgccaggccatcacccgcgccatc
gccgatcaggcccgcaccattcgtattccggtgcatatgatcgaaaccatcaacaaactc
atccgcgtttcccgacacctcgttcaggaattgggacgcgaaccgacgccggaagagatc
gccaagaaaatggccctccccgtcgagaaggttcgcaaggtcctcaagatcgccaaggaa
cccatttcactggaaaccccgattggcgaagaagagaacagccacctcggcgatttcatc
gaggacaaaaagatcatgtcccccatcgacgccgtggtcaaaaagaacctcaaggatcaa
accctcaaggtgctgtccaccctcgcctcgcgcgaagaaaaagtgcttcgcaagcgtttt
ggcatcgggctggattcagagcatactctggaagaagtcggacaggatttctcggtaacg
cgcgagcgcatccgacaaatcgaagccaaggccctgcgcaaactgcgccaccccagccgc
agtaagaaactgcgaagcttcctcgaaggttaa
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