KEGG   Nitrobacter vulgaris: ACS5HD_04255
Entry
ACS5HD_04255      CDS       T11906                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
nvb  Nitrobacter vulgaris
Pathway
nvb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nvb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACS5HD_04255 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nvb03021]
    ACS5HD_04255 (rho)
   03019 Messenger RNA biogenesis [BR:nvb03019]
    ACS5HD_04255 (rho)
Transcription machinery [BR:nvb03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     ACS5HD_04255 (rho)
Messenger RNA biogenesis [BR:nvb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     ACS5HD_04255 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 NACHT S1CSD-TOTE-2 AAA Fungal_virus_P2_C
Other DBs
NCBI-ProteinID: YDI48996
LinkDB
Position
841840..843105
AA seq 421 aa
MREMKLQDLKAKTPAELVSFAEELGVENASTMRKQELMFAILKQLAIQETDIIGEGVVEV
LSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVN
TLNFEDPEKSKHKVNFDNLTPLFPDQRFRLELEDPTRKDLSARVIDIVAPIGKGQRALIV
APPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRKVADKRTFPA
IDIARSGTRKEELITDPQLLKKMYVLRRILNPMGTMDAIEFLLDKLRNTKNNGEFFELMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcgggaaatgaaacttcaagacctcaaagccaagactccagctgaactcgtctcgttt
gcggaagagcttggggttgaaaatgccagcaccatgcgcaagcaggagctgatgttcgcg
attctgaagcagcttgccatccaggaaaccgatatcatcggcgagggtgtcgttgaggtg
ctctcggacggcttcggcttcctgcgctcgccggacgctaactatctgcctggtccggac
gatatctatgtttcgccatcgcagattcgccgcttcggtctgcgaaccggagataccatt
gaagggcacattcgtagccccaaggagggcgagcgctactttgcgttgttgaaagtcaac
acgctcaatttcgaggatcccgagaagtccaagcacaaggtcaactttgacaacctgacg
cctttgttccccgatcagcggttccggctcgagctggaagatcccactcgtaaggatctg
tcggcgcgggttatcgatatcgtcgctccgatcggcaagggtcagcgcgccctgatcgtg
gcgccgccacggaccggcaagaccgtgctgatgcagaacatcgcgcactccatcaccgcc
aatcatcccgaatgctatctgatcgttcttctgatcgatgaacgtcccgaggaagtcacc
gacatgcaacgctcggtgaaaggcgaagtcgtgtcttccactttcgacgaaccggcggtg
cgccatgtccaggttgccgagatggtgatcgaaaaggccaagcgtctggtcgaacacggt
cgcgacgtcgttatcctgctcgattcgatcacgcgtctgggccgcgcctacaacaccgtg
gtgccctcctccggcaaggtgttgacaggcggcgtcgatgctaacgccttgcagcggcca
aagcggttcttcggcgcagcgcgcaacatcgaggaaggcggctcactgaccatcatcgct
accgcgctggtcgataccggaagccgtatggacgaagtgatcttcgaagagttcaagggt
accggcaattcggagctgatcctcgaccgcaaggtcgccgacaagcgaaccttcccggcg
atcgacatcgcccgctccgggacgcgcaaggaagagctgatcaccgatccgcaactgctc
aagaagatgtatgtgctgcggcgcatcctcaacccgatgggtaccatggatgcgatcgag
ttcctgctcgacaagctgcgcaacactaagaacaacggtgagttctttgagttgatgaat
acttga

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