Nitrobacter vulgaris: ACS5HD_12010
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Entry
ACS5HD_12010 CDS
T11906
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nvb Nitrobacter vulgaris
Pathway
nvb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nvb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACS5HD_12010 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nvb03021
]
ACS5HD_12010 (rpoB)
03400 DNA repair and recombination proteins [BR:
nvb03400
]
ACS5HD_12010 (rpoB)
Enzymes [BR:
nvb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACS5HD_12010 (rpoB)
Transcription machinery [BR:
nvb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACS5HD_12010 (rpoB)
DNA repair and recombination proteins [BR:
nvb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACS5HD_12010 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
YDI46695
LinkDB
All DBs
Position
2446616..2450749
Genome browser
AA seq
1377 aa
AA seq
DB search
MVQQTFTGRKRVRKFFGHIREVAEMPNLIEVQKASYDQFLMVAEPEGGRLDEGLQAVFKS
VFPINDFSGTSQLEFVRYEFEAPKYDVDECRQRGMTYAAPLKVTLRLIVFDIDEETAAKS
VKDIKEQDVYMGDIPLMTMNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFA
ARVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMFALGLDGEEILSTFYKKIIYKRA
KSGGNSDGWRVPYDPVRFRGYSTLNDLIDADTGKVVLEAGKKFTVRAARQLQEKGLKALR
MSDDDLVGMYLAEDLVNPKTGEIYAEAGEEITEKSLKGLNEHGYKELPLLDIDHVNVGPY
IRNTLSADKNMTREDALFDIYRVMRPGEPPTLELAQNMFQSLFFDAERYDLSAVGRVKMN
MRLDLDAPDTYRTLRKEDILAVIKTLVDLRDGRGEIDDIDHLGNRRVRSVGELMENQYRV
GLLRMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITH
KRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGF
VETPYRKVKDGRVTDEVVYLSAMEEGRYHVAQANLPLDNRGRFTEDLVVCRHAGEVLPVT
PDKVDFMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEG
VVARDSGAAIAARRSGVIDQIDATRVVIRATEDLDPTKSGVDIYRLMKYQRSNQSTCINQ
RPLVKVGDIVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDV
FTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKI
TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALA
IEREEIERLAKDRDDEQAILDRNVYGRLADLLENRQGIAGPKGFKKDTKITKSVLEEYPK
SQWWLFASPNDKLMAEIEAMRKQYDELKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFV
AVKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILE
THLGWACAGLGRRIGQAVDAYLASAKQETKPLKETLKKVYGDNETIKSLNDHELVELGRN
LSRGVPIATPVFDGAKEADIEQMLELAGMDRSGQSTVYDGRTGDSFDRKVTVGYIYMLKL
HHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS
DDVAGRTKVYEAIVRGDDTFEAGIPELFNVLVKEMRSLGLNVDLHNSKVGGMSEAAE
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atggtgcagcagacgttcaccggtcgcaagcgggttcgcaagttcttcgggcatatccgg
gaagtcgccgagatgccaaacctgatcgaggttcagaaggcgtcctacgaccagttcctg
atggtcgccgaaccggagggtggccggctcgacgagggcttgcaggcggttttcaaatca
gtgtttccgattaacgacttttcgggcacctcgcagctcgaattcgtgcgctacgaattc
gaggcgccgaagtatgacgtcgacgaatgccgccagcgcggcatgacctatgccgcgccg
ctgaaggtgacgctccgcctcatcgtattcgatatcgacgaggaaaccgccgcgaagtcc
gtgaaggacatcaaggagcaggacgtctacatgggcgacattccgctcatgacaatgaac
ggcaccttcgtcgtcaacggcaccgagcgcgtcatcgtctcgcagatgcatcggtcgccc
ggcgtgttcttcgatcacgacaagggcaagacccattcgtcaggcaagttgctgttcgcc
gcgcgcgtcattccctatcgcggctcgtggctcgacatcgagttcgatgccaaggacatc
gtgttcgcgcgcatcgaccgtcgccgcaaaattccggtgacgtcgctgatgttcgccctc
ggcctcgacggcgaggaaatcctcagcacgttctacaaaaagatcatttacaagcgcgcg
aaatccggcggcaattcagacggctggcgcgtgccctatgatccggttcgctttcgcggt
tattcgacactgaacgacctgatcgacgctgataccggcaaggtcgtgctcgaggccggt
aagaaatttacggttcgcgccgcgcgccagctccaggagaaggggctgaaggcactgcgc
atgagcgacgacgatttggtcggcatgtatctcgccgaggatctcgtcaatcccaaaacc
ggtgagatctacgccgaagccggcgaggaaatcaccgagaagtcgctgaaggggctgaac
gagcacggctataaggaattgccgctgctcgacatcgaccatgtcaacgttggtccttac
atccgcaacacgctcagcgctgacaagaacatgacgcgggaggacgcgctgttcgacatc
taccgggtgatgcgtccgggtgagccgccgacgctggagttggcgcagaacatgttccaa
tcgctgttcttcgacgccgagcgctacgatctgtccgccgtgggccgcgtcaagatgaac
atgcgcctcgatcttgatgcgccggacacgtatcgcacgctgcgcaaggaagacatcctt
gcggtcatcaagacgctagtcgacctgcgcgacggcaggggtgagatcgacgatatcgac
caccttggcaaccgtcgcgtgcgctcggtcggtgaactgatggaaaaccagtatcgcgtc
ggcctgttgcgcatggagcgagccatcaaggagcggatgtcctccgtcgacatcgacacc
gtgatgccacaggatctgatcaacgcgaaacccgcggctgctgcggtgcgcgagttcttc
ggatcgtcgcaactctcgcagttcatggatcagaccaacccgctctcggagatcacccac
aagcgccgcctgtcggcgctcgggccgggtggtctgacacgcgaacgcgcaggcttcgag
gtgcgcgacgtgcatccgacgcactacggccgtatctgcccgatcgagacgccggaaggt
ccgaacatcggccttattaactcgctcgcgacgttcgcgcgcgtcaacaaatacggcttc
gtcgagacaccgtatcgcaaggtgaaggacggccgcgtcaccgacgaggtggtctatctc
tcggcgatggaagagggccgctatcacgtcgcgcaggccaacctgccgctcgacaaccgc
ggccgtttcactgaagacctcgtggtctgccgtcatgccggcgaggtgctgccggtgacg
ccggacaaggtcgacttcatggacgtgtcgccgaagcagctcgtctcggtcgccgcggcg
ctcattccgttcctcgagaacgacgacgccaaccgcgcgctgatgggctcgaacatgcag
cgtcaggcggtgccgctggtgcgcgccgaggcgccgttcgtcggcaccggcatggaaggc
gtggtcgcccgcgactcgggcgcagcgatcgccgcgcgccgctcgggcgtgatcgatcag
atcgacgccacccgcgttgttatccgcgcaacggaagatctcgatccgaccaagtcgggt
gtcgatatctatcgtcttatgaagtaccagcgctcgaaccaatcgacctgcatcaatcag
cgtccattggtgaaggtcggcgatatcgtcaaaaagggcgacatcatcgcggacggcccg
tccaccgatctcggcgaactcgcgctcggccgcaacgtgctggtcgcgttcatgccgtgg
aatggctacaacttcgaagactcgatcctgctctcggagcggatcgtcaaggaagacgtc
ttcacctcgatccatatcgaggaattcgaagtgatggcccgcgacaccaagctgggtccc
gaggaaatcacacgcgacattccgaatgtttcggaagaagcgctgaagaaccttgatgaa
gccggcattgtctacatcggcgccgaggtccgcgcgggcgacattctggtcggcaagatc
acgccgaagggcgaaagcccgatgaccccggaagaaaagctgttgcgcgcgatcttcggc
gagaaggcttccgacgttcgcgacaccagcttgcgcgtgcctccgggtgtgcagggcacg
attgtcgaggtccgcgtctttaaccgccacggtgtcgacaaggatgaacgtgcgctggca
attgagcgggaagaaatcgagcgtcttgccaaggaccgcgacgacgagcaggcgattctc
gaccgcaacgtctacggccgcctcgctgatctgctcgaaaaccgtcagggcattgccggc
ccgaagggcttcaagaaggataccaagatcacaaagtcggtgctcgaggaatatccgaag
tcgcagtggtggctgttcgcatcgccaaacgacaagctaatggccgagatcgaggccatg
cggaagcagtacgacgagttgaaaaagggcctcgagcagcggttcctcgacaaggtcgaa
aagctgcagcgtggtgacgagttgccgcccggcgtgatgaagatggtcaaggtcttcgtc
gccgtgaagcgcaagattcagcctggcgacaagatggctggtcgtcatggcaacaagggt
gtggtctcgaagatcgttccgatcgaggacatgccgttcctcgaggacggcacccacgcc
gatatcgtgcttaacccgctcggcgtgccctcgcgcatgaacgtcggtcagattctcgaa
acccacctcggctgggcatgcgccggccttggcaggcggatcggacaggccgtcgatgcc
tatctcgcgagcgcgaagcaggaaaccaagccgctgaaggagacgctcaagaaagtctat
ggcgacaacgagaccatcaaatcgctcaacgatcatgaactcgtcgagctcggccgcaat
ctgagccgcggcgttccgatcgcaacgccggtgttcgacggcgccaaggaagccgatatc
gagcagatgctcgagctcgctggcatggacaggtcaggccagtcgaccgtctatgacggg
cggaccggtgactcgttcgatcgcaaggttacggtgggctacatctacatgctcaagctg
caccaccttgttgatgacaagatccacgcgcgctcgatcggaccttactcgctcgtcacc
cagcagccgctgggcggcaaggcgcagttcggtggccagcgtttcggcgaaatggaggtg
tgggccctcgaggcttacggcgcggcgtacacgctccaggaaatgctgacggtgaagtcg
gacgacgtcgcgggccgtaccaaggtctatgaggccattgtgcgaggcgacgatactttc
gaggcaggcattccggaattgttcaacgtgctggtcaaggaaatgcgctcactgggcctg
aatgtcgatctgcacaactccaaagtcggcggcatgtccgaagcggccgagtag
DBGET
integrated database retrieval system
