Nematostella vectensis (starlet sea anemone): 116616354
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Entry
116616354 CDS
T01037
Name
(RefSeq) exosome complex exonuclease RRP44-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
nve
Nematostella vectensis (starlet sea anemone)
Pathway
nve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116616354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nve03019
]
116616354
Messenger RNA biogenesis [BR:
nve03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
116616354
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
CSD2
OB_HELZ2
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
116616354
NCBI-ProteinID:
XP_032234336
LinkDB
All DBs
Position
Unknown
AA seq
950 aa
AA seq
DB search
MLKSKTFVKKTKKGGILKVVREHYLRDDVWCGANGCSICGQSEASVLDPLPQSLSSSCDF
PHYLIPDTNVLLHQIDVIEDPVFKNVILLQTVLEEVKHLNFGVYKRARSIISDPERKFYV
FSNEHHRSTYIERKKDESSNDRNDRAIRTAASWYGDHLQECEGGKDVETCVQVVLLTNDR
ANREKAHADGIVTYTIQQYVESLDGCADLVDRLANLQHSKQKQAIDGRGKQCLFPEHIPL
VKIHSGIKSGKYKQGTFHGSRENYLEATVYLKDGGDEVFIQGLINLNRAVNEDLVAVELL
SQEEWTAPSELVLDDADHSESEEEITSKKTQILDNNKNKLKKTGKVVGIIKRNWRPYCGV
LSSSGNLQSTRQLFVPAEKCVPRIRIETRQAETLRSQRIVVSIDSWPRSSRYPVGHFVRK
LGEIGDKATENELLLLEHDVPHLAFSASVQKDLPVMPWAIAEEEVSRRLDLRDLSICSVD
PPGCTDIDDALHWMKLDNGNYEVGVHIADVTHFIQPGTALDEEAANRGTTVYLTDQRIDM
VPELLSSNLCSLRSNVDRYAFSSIWEMTPDADVISTKFTKSIIRSKASLTYAEAQLRIDD
LSLNDDVTVSLRNLNKLAKILKQRRIDNGALTLASSEVRFFIDNETHDPIDVETKQLRDT
NSLVEEFMLLANISVAKHIHQRFPEFAVLRRHPSPPPSNYDILVKAARSKGVEIKVDSAK
ALAVSLDKAHLPGEPYFNTMLRILATRCMMQAVYFCSGMLPKDEYRHYGLATPIYTHFTS
PIRRYSDILVHRLLAVSIGAMNSYPDLLNKDKVQKQCNHLNHRHKMAQYAGRASVDLHTQ
LFFKKRPSTEDGFVLFVRKNALQVLVPKFGLQGTVYMNQLGVDEQLLAFNEEEPSLAVGD
VKFKMFDKVTLQISVEQNATQNSFVKFMLTSPQILATNQMEPSPKKKKLK
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaatccaagacctttgtgaagaagaccaagaagggaggaatcttgaaggtcgtt
cgggagcattatttgcgtgatgacgtgtggtgcggtgcgaatggatgttctatttgtggg
cagagcgaagcaagcgtgctagatcccttgcctcaaagcctttcgtcctcgtgtgatttc
ccacactatcttattccggacactaacgtactgctgcatcagatagatgtaatcgaagac
ccagtcttcaagaacgttatattgctgcagaccgtcctggaagaggttaaacatttgaat
tttggggtatacaaacgagcaagaagtattatctcagatccagaaagaaaattctatgta
ttttcaaatgagcatcatagaagtacatacatagagaggaaaaaagatgagagttctaat
gacaggaatgacagagcgatacggacagctgcaagctggtatggagaccacttgcaggag
tgtgaaggagggaaagatgtggagacatgtgtacaggttgtacttctcactaatgacaga
gcaaacagagagaaagctcatgctgatgggattgttacatatacaattcagcagtatgtg
gagagccttgatgggtgtgcggatcttgttgatcgcttggcaaacttacaacacagtaaa
caaaaacaggcaattgatgggagaggaaagcaatgtctatttcctgagcacatcccactt
gtaaaaattcactctggcatcaaatcagggaaatacaaacagggaaccttccacggtagt
agagaaaattacttagaggcaactgtgtatttaaaagacggtggagatgaggtgttcatt
caaggattgataaacctcaatcgagctgtaaatgaagatctagttgcagtagagctgctc
tctcaggaagaatggacggcaccatctgaactagtactagatgatgccgaccatagtgag
agtgaagaagaaataacaagcaagaaaacacagattttggataacaataaaaataaatta
aagaaaactggaaaggttgttggaataatcaagaggaattggagaccatactgtggcgta
ctgtcttcatcaggaaatctgcagagcactcgacaactgtttgtgcctgctgagaagtgt
gttcctagaatccgcatagaaaccagacaagctgagacccttaggagtcaacgtatagtc
gtcagtattgattcatggccaagaagctcaaggtaccctgtgggtcattttgtgcgtaag
ttgggtgagataggggacaaagcaaccgagaatgagttacttctgctggaacatgatgtg
ccccatcttgcattttctgcctctgtgcagaaagatcttcctgtcatgccttgggcaata
gcagaagaggaagtaagtcgccgcctggacctgcgagatctgtccatatgtagtgtagac
ccaccagggtgtactgacattgatgacgcattacactggatgaaactggataatgggaat
tatgaggttggtgtccatattgccgatgttacacattttattcagcccgggacagcactg
gatgaggaagctgctaataggggcacaactgtctatctaactgaccagcgtattgacatg
gttcctgagttgctgagttcaaacttgtgctcgttacgctccaacgtggacaggtatgca
ttttcctcaatttgggaaatgacacctgatgcagacgtcatctctacaaagttcactaaa
agcatcatccggtcaaaggcctctctgacgtacgctgaagcacaacttcgcatcgacgac
ttatctctaaatgatgatgtcacagtttctttgaggaacttgaataaactcgcaaaaata
ttaaaacagcgccggattgataatggggcgctgacactcgcctcatccgaagtgcgattc
ttcattgacaatgagacgcacgaccccattgatgtagagacaaaacaacttcgggacact
aactctcttgtggaagagttcatgttgctggcaaacatctccgtagcgaagcacatccat
cagcgattccctgagtttgcagtcctgcgtaggcacccctccccacctccgtccaactac
gacatacttgtcaaggctgcacgctctaagggagtcgagatcaaagtggattcggccaaa
gcgcttgccgtctctcttgacaaagcacacctacctggcgagccttacttcaacacgatg
ctgcgtatcctagcaacccggtgcatgatgcaagcagtctacttctgctcgggcatgctc
cctaaggacgagtaccgccattatgggctggcgacccccatatacacacactttacctca
ccaatcagacggtattctgatatacttgtccaccgtcttcttgctgtctccatcggcgcc
atgaactcgtacccagacctccttaacaaagataaggtccagaaacaatgcaaccatctg
aaccacaggcacaaaatggcgcagtatgctggaagggcatcagtcgaccttcacactcag
ttattctttaaaaagcgcccctccacagaggatggcttcgtgttgtttgtgcgcaagaat
gcgctccaggtgctggtaccaaagtttgggctgcagggaacagtatacatgaaccaactt
ggtgtcgacgagcaactcctggcgtttaacgaggaggagccgtccttagctgttggcgat
gtcaagtttaagatgtttgataaagttacgctgcagatttcagttgagcaaaacgcgaca
caaaattccttcgtcaagttcatgctcacctctccccagatattagctaccaatcaaatg
gagccaagcccaaagaagaagaagctgaaatga
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