Nematostella vectensis (starlet sea anemone): 5505415
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Entry
5505415 CDS
T01037
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
nve
Nematostella vectensis (starlet sea anemone)
Pathway
nve04382
Cornified envelope formation
nve04512
ECM-receptor interaction
nve04518
Integrin signaling
nve04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
5505415
04518 Integrin signaling
5505415
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
5505415
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
5505415
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nve04147
]
5505415
00536 Glycosaminoglycan binding proteins [BR:
nve00536
]
5505415
Exosome [BR:
nve04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
5505415
Glycosaminoglycan binding proteins [BR:
nve00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
5505415
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
VWA
VWA_2
Sec23_trunk
Motif
Other DBs
NCBI-GeneID:
5505415
NCBI-ProteinID:
XP_032229734
LinkDB
All DBs
Position
Unknown
AA seq
1973 aa
AA seq
DB search
MKLRTALPFVLGLLLFALHSSKAQNCVGVGCQDECDCLKGPKGARGRPGPQGKMGPQGDP
GPAGKDGLRGPKGVKGEAGVQGPTGPAGDPGMTGVPGFPGINAIPGIPGIQGPKGFYGLC
GCNGSRGEGGLPGGNGLPGNPGDPGRPGLKGEEGEPYRGDFDTRNIQKGQPGGPGRRGPV
GPPGPQGIQGNPGYQGVPGPRGMQGEEGPAGNKGPQGDPGPAAMEGNKGELGEQGEPGDP
GTLEVEGKTGDAGDQGPKGNVGAKGEKGLQGNTPDQPGPPGRRGSAGMKGEPGPAGEKGM
QGDSGNDGVRGPKGFGGVTGEQGDAGPPGPEGNMGPRGQPGPEGSPGLPGERGTGGVPGP
KGKQGAPGTIGFPGSRGDTGDLGPPGAKGLPGAQQYGLPGPLGEAGPPGSQGSPGAPGII
GMNGAMGKKGDTGPLGPKGQPGSPGIDIPGPKGMDGPPGEKGLPGVQGDPGIKGPKAEPP
FCPEGECPQPKKGEPGATGNVGDQGPIGPPGRPGPKGPKDTCPRCPPGPPGPKGKRGETG
PRGRPGEPGADGVRGPDGSTGERGETGLDGAPGKKGEDGTKGEQGVPGAKGQPGLDREEV
VMPPGESGAAGDLGPDGPPGPKGAPGAPGFSGIEGLKGQSGPLGDPGDNGIDGISGYPGV
PGRKGDPGQKGDPPRFVPVPDHGEKGQSGEPGFPGEIGEAGTQGEKGNPPPTPIIIKYKG
PKGTSGAQGKEGPRGPDGRDGQPGPKGLPGDDGLKGPPGDGLPGKPGLIGEQGAIGFKGL
RGMTGNPGPNGPAGATGPPGIPGFPGQKGEPGISRPGPPGENGAFGLPGRKGDSGDRGPD
GNPGLPGQKGDKGLLGPIGPPGRGGVGSQGFQGQKGFKGDPGDAIPGNPGDPGVMGFPGE
PQRGEPGDPGRPGLPGQTGADGPPGMIGPRGPDGNNGPQGEGGPNGIKGKPGNILCGQDP
ADYAFLVDVSGSIRRSELRTVQSFLKNIVEYLIIGPQFTHVGVISYASDANVELQFSDTY
EKIEIQNRIDQIPLTRGLTRIDLALQKASNELFTVRNGMRTFSRKVMILLTDGNQTGIDN
APDAIPLSEAIKPIKSLGVKVVAIAIGSADRNQLLDLVETEEDILQPRNFGELLQYVKQT
VSYSCRGPPGDNGPRGKKGEAGSDGRPGFPGESGANGLPGPPGLAGSPGPRGPNGEPGDP
GMDGDKGPPGPVDAGPRGPPGEPGPPGPFGAAGLDGMPGKPGAKGESGQPGMRGADGLSG
PPGFDGQAGETGAIGFKGEPGTPGIPGFPGLTGSSGRDGLDGSPGRPGPSGRIGIRGLPG
ANGEPGIGLPGRPGFPGNPGEYGDNGPDGAQGDRGPPGPPGRAPPGPKGGRGQIGAKGQK
GERAVWDRATPLPPGKKGEPGMDGMPGMPGKPGLPGDSGSIGETGATGTPGSKGVPGDRG
RNGENGPKGRRGQEGPAGGQGGPGEEGTLGPPGPTGGEGLHGRDGRPGPSGDPGLPGTVG
PRGEKGFLGETGITGLPGFPGRQGRQGAPGIFGDNGPRGGRGLSGEPGFPGRPGRRGPSG
SDGPLGPKGSLGETGGRGGPGPRGPKGRAGRDGPDGNPGPRGDLGSGGQQGDRGEASINA
GTKGEKGEPGEAGFPGPQGPPGERGATGPPGTISGPPGIRGDPGIPSVVRGPPGKPGLSG
NKGKEGLPGDDGVPGQPGPPGPPGDGITKVGFYIVKHSQTTTPPECPPTYDKLWDGYSLL
YVQGHDVSHGQDLGQAGSCLKRFTTMPYLYCNIFGKCNYASRNDYSYWLSTDNQVPMMPI
QASAVEPYISRCTVCESHGPVMAVHXQSTTLPTCPGGWSSLWSGYSFLMHTGAGGSGTGQ
SLGSSGSCLESFRPNPFTECHGRGTCHYYANKYSFWLATVNTPFQTQQSETLKAGNLLSR
VSRCQVCIRLSRKKRRQAAEALPVARAQRLSRSAAVNQDQHLAAAKQGLRQGS
NT seq
5922 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgaggacggcgttgccgttcgtcctaggacttcttcttttcgccttacactct
tcaaaggcacaaaattgtgttggggttggttgtcaagatgagtgtgattgcctgaaagga
ccaaaaggagccagaggaaggccaggacctcaaggaaaaatgggcccacagggtgatcct
ggaccggctggtaaagatggtttgcggggaccaaaaggagtgaagggtgaagctggtgta
caaggacctacagggcctgctggtgaccctggcatgactggagtccctggttttcctgga
atcaatgctatccctggtatccctggtatccaaggacctaagggattctatggcttatgc
ggatgcaacggaagcaggggtgaaggtggtcttcctggtggaaacgggcttcctgggaac
cctggagatcctggccgacctggactgaaaggagaagagggcgagccgtacagaggggat
tttgatacaagaaatatacaaaaaggacaaccgggaggaccaggtcgccgtggtcctgtt
ggtccaccgggaccacaaggaatccaaggcaacccaggataccagggtgtaccaggacca
agaggcatgcagggtgaagaagggcctgctggaaacaaaggaccacagggagaccctggt
cctgctgcaatggaaggaaacaagggcgaattgggcgagcagggagagcccggagaccca
ggaacccttgaagtggagggaaagacaggagatgcgggagatcaaggaccgaaaggcaat
gtgggcgcaaaaggtgagaaaggtttgcagggaaatacacctgatcagcctggtcctcct
ggccgacgtggttcagctggaatgaagggcgagccaggtcctgcaggagagaaaggaatg
caaggggacagtggcaatgatggtgtccgagggccaaaaggatttggtggtgtgactggc
gagcagggtgatgctggtccgcctggacccgaggggaatatgggaccacgtggtcagccc
ggacccgaggggtcacctggtcttcctggagaaagaggaacgggtggagttcctggcccc
aaaggcaaacaaggcgcacctggtacaatcggctttcctggatctcgtggggacactggt
gatctgggacctccaggtgctaagggtcttccaggggctcaacagtatggtctccctggg
cccctcggcgaggcaggacctcctggaagccaaggctctcctggtgctccaggcatcatt
ggcatgaacggagcaatgggcaagaaaggcgacacgggaccactcggtcctaaaggacag
ccgggctctcctggtattgatattcctggtcctaagggcatggacggacctcctggagaa
aagggcctccccggagttcaaggcgaccctggtatcaagggacccaaagccgagccaccc
ttctgtcccgaaggggaatgcccacaacccaagaaaggcgaaccaggggctacgggcaat
gttggtgatcagggacctataggtcctcccggccgtccaggccccaagggaccaaaagac
acctgccccagatgtcccccaggtcctccaggcccaaagggtaagagaggagagacaggt
ccccgtggtaggccgggagagcctggggccgatggtgtgagaggacccgatggttctaca
ggagaacgtggtgaaactggacttgacggagcccctggtaaaaagggtgaggacggcacc
aaaggagaacaaggagtgcctggagctaaaggtcaacctggacttgaccgcgaggaggtc
gttatgccgcctggggagtcaggtgcagctggtgatttaggccctgatggtccccctggc
cccaaaggtgccccaggtgcccctggcttctcgggcattgaggggcttaaaggccaaagt
ggaccccttggtgaccctggcgataatggaattgatggtatctctggatatcctggggtt
cctggtaggaaaggagaccctggacagaaaggggacccacccagatttgtaccggtacct
gatcatggggaaaagggacagtctggcgagcctggatttccaggagagattggcgaagct
gggacacagggagagaaaggcaaccccccacccacacctattatcattaagtataagggt
ccaaaaggaacatctggcgcgcaaggcaaggagggcccacgtggtccagatggcagggat
ggccaaccaggacccaagggtctaccaggcgatgacggccttaaaggaccacctggagac
ggtcttcctggaaagcctgggcttattggagagcaaggcgcaattggattcaagggtctg
cgaggcatgacgggtaacccaggccctaatggtccggctggcgctactggtccaccaggc
attcccggcttcccaggccaaaaaggcgagcccggtatatcccggccaggacctcctggg
gagaatggtgcatttggattgcctggacgcaaaggcgacagtggagaccgcggtcctgat
ggaaaccctggccttcctggacagaagggagataagggtctgttgggacctatcggaccc
cctggacgcggtggagtgggatcgcagggcttccagggacagaaaggattcaagggtgac
cctggggacgctattcctggtaaccctggtgacccaggtgtcatggggttcccaggagaa
cctcagagaggcgaacccggtgaccctggtcgtccaggtcttcctggccagactggtgct
gatggccctcctggtatgattggaccacgtggtcccgacggtaacaacggtccccaggga
gaaggaggacccaacggaataaagggaaaacccggaaacattctgtgcggtcaagaccca
gccgattacgccttcctcgtggatgtctcgggaagtattcgtcgctcggagttgcgtact
gtccaatctttcctcaagaacattgtggaatacctaatcatcggccctcagttcactcac
gtgggagtcatctcatacgcttcagacgccaacgttgaactccagttcagcgacacgtat
gaaaagatcgaaattcaaaaccgaatcgaccagatcccgctcacccgcgggttaacccgt
atcgaccttgcacttcagaaggcttccaacgagctgtttactgtacgcaatggcatgcgg
accttctcaagaaaggttatgattcttcttaccgacggcaaccagacaggaatcgataat
gctccggatgcgatcccattgtcggaggctatcaagccaatcaaaagtttaggagtgaag
gttgtcgcgatcgctattggaagtgctgacagaaaccaactgctggacctggtcgagaca
gaggaagacattctccaaccgaggaatttcggcgagctgttgcaatatgttaaacagacc
gtgtcatactcttgccgaggcccgcctggagataatggtcctcgcggaaagaagggtgag
gctggctctgatggtcgtcccggcttccctggcgaaagcggcgcaaatggtctgccaggt
ccacctggattggccgggtccccagggccgcgtggtcctaacggagaaccgggtgacccg
ggtatggacggtgacaagggaccaccaggccctgttgacgcaggaccccgcgggcctccc
ggagaaccaggtcccccaggacctttcggcgccgctggtctagacggaatgcccggaaaa
ccaggcgcaaagggagagtcaggacagcccggtatgcgaggagctgatggtctatctggg
ccacctggatttgatggacaggcaggggaaacaggagcgatcggattcaaaggcgagcct
ggtacacctggcattcctggattccctggtctgacgggatcgtctggacgagacggcctg
gatggttcacctggacgtccaggaccttcaggtcgcattggaatcagagggttgcctggt
gctaacggggagccaggaattggccttcctggacgtcctggattccctggtaaccctggt
gaatatggtgacaatggaccagatggagcccagggtgacagaggaccgcctgggccgccc
ggccgcgcacctcctggacccaagggagggagaggtcagatcggcgcgaaggggcagaag
ggtgagcgagcagtatgggatcgtgcgactcctttgcctcccggcaaaaagggtgagcct
ggcatggatggtatgcctggaatgcctggaaaacctggtctgcctggcgactcgggaagc
attggtgagacaggagcaactggtactcccggatctaaaggtgtccctggcgatcgagga
cgtaatggtgaaaacggtcccaaagggcgaagaggacaagagggcccagcaggaggacag
gggggtccgggagaggaaggcacccttggtccccctggaccgacaggcggggaggggctc
catggacgcgacggaagacctgggccgagtggagacccaggcctacccggcacagttgga
ccgagaggggagaaaggttttcttggggagactggtatcactggcttgcctggctttcct
ggaaggcaaggtcgccaaggtgctcccggcatatttggtgacaatggcccacgcggtggg
aggggcttgagtggagagcccggtttcccaggtcggcctggtcggcggggaccaagcggg
tctgatggtcctttgggccccaaaggctcccttggagagacaggtggtcggggtggcccc
gggcctcgaggacctaagggaagagcaggtcgggacggtcctgatggtaacccaggccca
cgaggagatctcgggtctggcggtcaacagggagaccgtggtgaagcttctatcaatgca
ggaaccaagggcgaaaagggtgaacctggcgaagccggctttcctggccctcagggtcca
cctggggagagaggagcgacaggtccccccggaacaatttctggcccacctggtatcaga
ggagatccaggcatcccgtctgtggtcagaggcccccctggcaagcctggtctttctggt
aacaagggtaaggaaggtcttcctggggatgatggtgttcctggacaacctggacctcca
ggaccccctggtgatggcattacaaaggtcggcttttacatcgtgaaacacagtcagacg
acaactccaccggaatgtccgcccacctatgacaagttgtgggatggttacagtcttctc
tacgtgcaagggcacgacgtgtcccacggtcaggatcttggtcaagccggctcgtgtctc
aaacgattcaccactatgccctacctctattgtaatatctttggcaaatgcaactatgct
tccagaaacgactacagctactggctttcaaccgataaccaggtcccgatgatgcccatt
caagcgtccgcggtggagccttacatctctaggtgcacggtctgtgagtcacacggtccc
gtcatggccgtccacnntcaaagcacgaccttaccaacgtgcccaggaggctggagtagc
ttgtggagcggctatagtttccttatgcacacaggcgcgggaggtagtggtaccggccaa
tcactgggctcttccggttcctgcttagagagctttaggcccaatccctttaccgagtgt
cacggccgtggcacttgtcattattatgctaacaaatacagcttctggctcgccaccgtc
aacacgccattccaaacacaacaatccgagacgctcaaagctggcaatctactcagcagg
gtcagccgctgccaggtttgtatccgtctctcacgtaagaagcgtcgtcaagctgccgaa
gctcttccagttgcccgagcacagcgccttagccgttcagctgctgtcaatcaagaccaa
catctagctgccgcgaaacaaggactacggcaaggctcctaa
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integrated database retrieval system
