Nematostella vectensis (starlet sea anemone): 5505427
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Entry
5505427 CDS
T01037
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
nve
Nematostella vectensis (starlet sea anemone)
Pathway
nve04512
ECM-receptor interaction
nve04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
5505427
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
5505427
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nve04147
]
5505427
00536 Glycosaminoglycan binding proteins [BR:
nve00536
]
5505427
Exosome [BR:
nve04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
5505427
Glycosaminoglycan binding proteins [BR:
nve00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
5505427
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
5505427
NCBI-ProteinID:
XP_001626268
UniProt:
A7SQ55
LinkDB
All DBs
Position
Unknown
AA seq
1741 aa
AA seq
DB search
MRLGSQCLGFLLAAALAVFNIPATESQAECQGCQACVPRCIGEKGDRGERGFPGLTGSSG
LPGFEGPEGIQGPRGFKGDKGEGGAQGMKGPRGKIGRPGFPGRPGIPGLPGNDGPRGEAG
EPGCNGTKGEPGFPGGPGRPGIPGVRGQDGVPGPKGEPGRAPTLLKGVKGEPGPEGPQGP
PGVRGDTGFPGLNGTQGLPGPKGPPGPTGPEGPKGNMGISFKGPQGMKGDKGTKGARGPP
GGGSGGSGCNGTTIFKGPPGAPGEKGEPGKQGEKGEEGRPGLPGAQGIEGPKGERGEPGN
QGLKGDRGVDGNPGPIGPLGDPGNKGDQGPPGEPGASGRPGIPGRPGTQGAKGSTGLPGI
GPPGPDGDRGPQGPTGFPGTKGNQGIAGPPGQIGDPGKMGPQGFKGDPGPPGPPGEVGVP
GAPGMKGPIGKPGPVGDAGAPGEKGARGLSIQGTPGMDGKRGPRGPIGEKGPTGFPGPPG
DSDYGPPGDKGLKGNTGPPGDEGVPGPIGPKGDKCEACPKPPPGPAGEPGSPGLPGEDGA
IGSRGLPGPSGEPGKPGPAGRAGLAGQDGLPGTPGTKGEPGPTGEKGEVFRIKGEKGAKG
QQGGIGNPGPPGLRGDVGPPGEQGPTGVPGTKGLKGERGIDGRPGQNGTAGFSGQKGEKG
LEGITITGEKGNPGPKGDRGIQGPKGLPGPKGGKGESWTSGGVGQIKQGPPGDPGNPGTD
GLPGAPGRDGIDGVRGPKGEPGSDGMKGEAGVGIDGPPGPPGPPGVTGEQGVKGDTGPSG
EPGPAGPPGPLGTPGTQGAKGEPGPLGTPGRQGLAGPPGRDGMKGDPGPRGRDGLPGEPG
ARGDIGSRGLPGEDGPRGPPGIQGMKGAKGDAITGPTGPPGPPGLPGRPGLKGERGRDGL
DGQNGLPGIPGPKGDTGPVGPPGRPGLPGPVGKEGPPGEDGNIGEKGYAGLPGPRGETGE
KGLDGPSGPPGTPGQPGPPGPRGPEGRQGFPGFKGNQGEKGRMGPPGTSEPGNVPGPKGD
PGPAGPRGPAGRNGIDGLPGTKGEPGSLGEKGDAGIPGQRGLTGNPGLPGAQGLKGEPGR
DGQNGSPGRKGEPGPAGKNGINGLDGPPGPDGPAGVQGVKGDPGVGQPGLPGPAGPKGER
GVNGFPGIKGIQGVQGLEGPPGPPGPPGQIGFTGAKGSKGDQGELVIERGAPGPRGNTGN
DGVDGLPGQKGQAGPPGPPGTAGLPGSEGAKGDRGIPGLNGLSGIPGERGPVGPAGPPGL
PGRAGQAGPKGETGLPGMPGLDGEKGSAGVPGIPGGPGGTGFKGDQGPPGLNGNPGAPGV
DGPTGPKGESGIAGLDGPKGEPGLPGRDGPAGEKGSPGLSGLRGDKGDRGLPGPSGPPGE
EGARGSDGFPGIPGSKGERGLIGPKGIKGERGYGKGIPGPRGEKGDSGFPGINGPPGPPG
QRGYEGARGPPGAKGQAGEDGRPGVPGEDGFPGIEGPLGEKGATGLPGLTGSIGVPGPPG
YSDFGFFLTRHSQTVRVPRCPEDRPPLWEGYSLLYVQGNERAHGQDLGSPGSCIQRFSTM
PFLFCNINNVCNLASRNDYSFWLSTPEPIPMMPVQETNVQPYIGRCAVCEVSSHVMAVHS
QSITVPSCPSGWSPLWQGYSFLMHTSAGNDGSGQLLSSPGSCLEDFRAHPFIECHGRGTC
HYYGSTYSFWLATVDQNKQFRIPRPETLKAGNLRERVSRCQVCQKNIRSGSSSASGARLR
N
NT seq
5226 nt
NT seq
+upstream
nt +downstream
nt
atgcggcttgggtcccagtgcttgggttttctcctagccgcggctttggccgtattcaat
atcccagcgacagagtcacaagctgaatgccaaggctgccaggcgtgtgttcccagatgt
attggtgagaaaggcgatcggggagaaagaggttttcctggattaacagggtcttctggt
ctacctggattcgaaggcccagagggtatccaaggacccagaggcttcaagggtgacaag
ggagagggaggagctcagggcatgaaaggcccaaggggcaaaattggaagaccaggtttc
cccggaagacctggaatacctggattacctggaaatgatggtccgcgtggagaagccgga
gagccaggttgcaatggtaccaagggtgagcccggatttcctggcggccctggaaggcct
ggtattcctggagttagaggccaagatggtgttcctggaccaaaaggtgaaccaggtcga
gccccaactttactcaaaggcgtcaaaggcgaacctggaccagaaggaccccaagggcca
ccgggtgttcgaggagatactggcttccctggtctgaatggtacccaaggattgcctgga
ccaaaaggaccaccagggcccacaggcccagaagggccaaagggcaacatgggtatttca
tttaaaggaccacaaggaatgaagggtgacaaaggtacaaaaggtgccagaggaccccct
gggggtggtagtggaggaagtgggtgcaatggtactacaatctttaaaggaccccctgga
gctcctggagagaagggagagccgggtaaacagggagaaaagggtgaagaaggaaggccc
ggattacctggtgcgcaaggaatcgagggcccaaaaggtgaacgtggggagcctgggaac
caaggtctgaagggcgatagaggagtagatggtaatcccggaccaattggacctttggga
gacccaggtaacaaaggtgaccaaggcccacctggggaacctggggcgagtggaaggcct
ggtattcccggacgacctggaacgcagggagccaaaggaagcactggccttcctggtatc
ggaccccccggacctgatggcgatagagggcctcaaggacctactggctttccagggacc
aaagggaaccaaggaattgctggaccccctggacaaatcggagatcccggaaaaatggga
ccccaaggcttcaaaggcgaccccggaccacccggtccacccggagaagtcggagttccc
ggcgctcctggcatgaagggccctattggtaaacctgggcctgtgggcgacgctggggcc
cctggtgagaagggagcccgtggactaagcattcaagggacccctggtatggacggcaaa
agaggacctcgaggacccatcggagaaaaaggccccaccggattccccggacctccaggc
gacagtgactacggaccgcccggagataaaggtctgaagggtaacaccggaccccctggt
gacgaaggcgtgcctggccccatcggccccaaaggagacaaatgcgaagcttgccccaag
cccccaccaggacctgccggagaacctggctctcccggtctacctggcgaagatggtgct
atcggaagcagaggtcttcctggaccttctggtgaacctggaaagcctggtcctgctggc
cgtgctggacttgctggacaagatggtctgcccggaacacccggtacgaaaggtgagcct
ggtccgactggagagaagggagaagtgttcaggataaagggcgagaaaggagccaaaggc
cagcagggaggcatcgggaaccctggaccaccaggccttcgcggtgacgtgggacccccc
ggtgaacaaggcccgacaggcgttcctggtacaaagggtttgaagggagaacgcggaatt
gatggtcgacccggtcaaaatggcactgctggtttctctggacaaaagggcgagaaaggt
ctggagggcattaccattaccggagagaaaggcaacccaggacccaagggagaccgtgga
attcaaggacctaagggacttcctggaccaaaagggggcaaaggggaatcatggacctca
ggtggcgtaggccagatcaagcaaggacctcccggagatccaggaaatccaggtactgat
ggtcttcctggtgctcctggccgtgatggtatcgacggtgttcgtggaccaaaaggagaa
cctggctctgacggcatgaagggtgaagccggagttggaatcgatgggccacctggacca
cctggaccaccgggtgtaactggggagcagggcgttaaaggtgataccggtccaagtggt
gaacctggccctgctggtccacctggccctcttggtactcccggaactcagggtgctaag
ggagagcctggccctcttggtactcctggtagacaaggccttgctggaccaccaggtcgt
gatggtatgaagggcgaccctggaccgcgtggtagagatgggcttcctggagaacctggt
gctcgtggtgatatcggatcacgtggtcttcctggtgaagacgggccccgtggacccccc
ggaatccaggggatgaagggcgcgaaaggcgacgcaatcactggccccacgggaccacca
ggaccccctggacttcctggaaggcccggcttgaaaggtgaacgaggacgtgacggacta
gatggacaaaatggattaccaggaattcccggaccaaagggagacactggccctgtcgga
cctcctggaagacctggccttcctggacctgttggaaaagagggaccacctggagaagat
ggtaacattggggagaagggctacgcaggtcttcctggtccacgaggagaaactggtgaa
aagggactggacggaccatcagggccacctggaacaccaggacaaccaggaccacccggc
ccgcgcggacccgagggtcgtcaaggttttccaggatttaagggtaaccagggagagaag
ggacgaatgggacctcctggcacatccgagcccggcaatgttccgggtcccaagggagat
ccaggaccagcaggcccgagaggacccgctggccgaaacggtatcgacgggttgcccggt
acaaagggtgagcctggaagtctaggcgagaaaggagatgctggtattccaggacaacgt
ggccttactggaaatcctggactaccgggtgcgcaagggctgaagggcgagcctggacga
gacggacagaatggtagccctggacgcaaaggggagcctggccccgccggaaagaacggc
atcaacggacttgatggaccacccggaccggacggacccgcaggcgtgcagggcgtgaaa
ggtgacccaggagttggacaaccaggacttcctggaccagccggaccaaagggcgagcga
ggagttaacggcttccctggcatcaagggtatccaaggcgtgcagggactggagggtcca
ccaggtcctcctggcccccctggacaaataggattcactggcgccaaaggaagcaaggga
gaccaaggagaactggtcatcgaacgtggcgcccctggacctcgtggaaacaccggtaac
gatggtgtagatgggcttcctggacaaaagggacaggcgggaccacccggacctcctgga
actgccggattacctggctctgaaggtgctaagggagaccgaggcatccccggattgaat
ggcctgtcaggaataccaggagaacgcggtcctgtcggaccagccggaccacctggcttg
cctggacgtgctggccaggccggtcccaagggcgaaactggacttcctggaatgcctggt
ttggatggtgagaagggtagtgctggagtacctggaatccctggaggcccaggaggcaca
gggttcaagggagatcaaggaccaccaggtctcaatggcaaccccggtgcccctggcgtg
gacggacctacaggacctaaaggcgaatcaggaatcgcgggacttgacggaccaaaaggt
gagcctggtctacctggacgcgacgggcctgctggtgagaagggctctccaggactatct
ggccttcgtggtgacaagggagacagaggtctgcctggaccctcaggcccgcccggcgag
gagggcgcaagagggtctgatggattccccggtattcctggctccaagggtgaacgaggg
cttattggacccaagggaatcaaaggagagcgtggctacggcaaaggcattcctggacct
cgtggagagaagggagatagtggcttccctggcattaacggacccccaggccctccaggt
caacggggctacgaaggagcgcgaggaccccctggtgcgaagggacaggctggagaggat
ggccgacctggcgtaccaggcgaggatggtttccccggtatcgaaggccctctcggagag
aaaggtgccactggcctgcctggtcttaccggtagcattggagttccaggtcccccaggt
tactccgacttcggcttcttcctgacccgccacagccagaccgtgcgtgttccccgctgt
cctgaggatcgccctccgctatgggaaggctacagtctgctctacgtccaaggaaacgag
cgggcacacggtcaagatctcggtagccccggctcctgcatccagcgcttcagcactatg
cctttcctgttctgtaacatcaacaatgtctgtaatctcgcctcaagaaatgactatagc
ttctggctatccacacctgagcctatccccatgatgccggtacaagagaccaatgtccag
ccctacatcggccgctgtgccgtgtgtgaggtcagctctcacgtgatggctgtacacagc
cagtccatcaccgtaccaagctgcccctcgggttggagtccactgtggcaaggttacagc
ttcttgatgcacacaagtgccggcaatgatggctcaggccagcttctatcttcgccagga
tcttgtctcgaggatttccgcgctcatcctttcatcgagtgccatggccggggcacatgc
cattattacggtagcacttacagcttttggctcgccactgtcgaccagaacaaacagttc
cgcatccctagacccgagacgctcaaagccggcaaccttcgagaacgagttagtcgctgt
caagtttgtcaaaagaacatccgaagcggttcttctagcgcttctggtgctcgattacga
aactag
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integrated database retrieval system
