KEGG   Nematostella vectensis (starlet sea anemone): 5506159
Entry
5506159           CDS       T01037                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
nve  Nematostella vectensis (starlet sea anemone)
Pathway
nve03013  Nucleocytoplasmic transport
nve03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nve00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    5506159
  09122 Translation
   03013 Nucleocytoplasmic transport
    5506159
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nve03019]
    5506159
   03041 Spliceosome [BR:nve03041]
    5506159
Messenger RNA biogenesis [BR:nve03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     5506159
Spliceosome [BR:nve03041]
 Complex C
  Other components
   EJC/TREX
    5506159
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    5506159
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_WDHD1_1st ANAPC4_WD40 WDR55 Beta-prop_Aladin Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd EIF3I WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EML eIF2A Beta-prop_Vps41 WD40_RFWD3 Beta-prop_WDR36-Utp21_1st Beta-prop_NOL10_N RMC1_N DSE1_N Beta-prop_HPS5 WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Tricorn_2nd Beta-prop_WDR35_TULP_N CFAP251_N TRM82_WD Beta-prop_WDR75_1st PD40 Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Cytochrom_D1 PAC11 Beta-prop_WDR41 TP_0598_N Beta-prop_DCAF12 Beta-prop_ELP1_1st Beta-prop_WDR11_1st Me-amine-dh_H
Other DBs
NCBI-GeneID: 5506159
NCBI-ProteinID: XP_001626890
UniProt: A7SNF3
LinkDB
Position
Unknown
AA seq 326 aa
MAATMASNNLDYLNEMRKHFECNTKTKDFTAHNSKVHSVSWSCDGRRLASGSFDRTASVF
VLDKDRLTLDHIYKGHNESVDQLCWHPSNPDLFVTASGDKTIRIWDARSIKCVHVVNTKG
ENINICWSPDGNTIAVGNKDDLITFVDTRTYKSKHDEQFKFEVNEISWNNTNDLFFLTNG
HGCINILSYPDLKPQQTLHAHPANCICIKFDPMGRYFATGSADALVSLWDLDELVCVRTF
SRLDWPVRTLSFSHDGRMLASGSEDLIIDIAMVETGERICEVQCHAPTFTVAWHLNKPLL
AFACDDKDKHDRDAGTVRLFGLPTSS
NT seq 981 nt   +upstreamnt  +downstreamnt
atggcggcgaccatggcgtctaataaccttgactatttgaacgaaatgcgtaagcacttt
gagtgcaatacgaaaaccaaagatttcactgcacataactcgaaggttcattctgtgtct
tggagctgtgatggcagacgtctggcatctggctcgttcgaccgcacagcaagtgtattt
gttcttgataaagacagattgactctggatcatatatacaagggacacaatgagagtgta
gaccagctgtgctggcatccctccaaccctgatctctttgtaactgcatctggtgacaag
acaatacgcatctgggatgcacgcagcatcaagtgcgtccatgttgtgaacactaaagga
gaaaatatcaatatttgctggagtccagatggtaacactattgcagtaggaaataaggac
gatcttattacattcgtggacacaaggacatataaatcaaagcacgatgaacagttcaag
tttgaggtgaatgagatatcctggaacaatacaaatgacttgttcttcctcacaaatggc
catggctgtattaatatcttaagctaccctgatctcaagccccaacagacgttacacgcc
caccctgccaactgcatctgcatcaagtttgaccccatgggaagatattttgcaactggc
agtgctgatgctttggttagcttatgggacctggatgagttggtctgcgtcaggacattc
tcaagacttgactggccggtgcgaaccctaagttttagtcatgatggaagaatgctggca
tcgggatcagaagatctcatcattgacattgccatggtagaaacaggcgagcgcatctgc
gaggtccagtgtcatgcccccacctttacagttgcttggcacctgaacaaaccattactt
gccttcgcctgtgatgataaggacaaacatgatcgagatgctggtacagtgcgactgttt
ggactcccaacttcttcatag

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