Nematostella vectensis (starlet sea anemone): 5506234
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Entry
5506234 CDS
T01037
Name
(RefSeq) collagen alpha-1(XVI) chain
KO
K06237
collagen type IV alpha
Organism
nve
Nematostella vectensis (starlet sea anemone)
Pathway
nve04382
Cornified envelope formation
nve04512
ECM-receptor interaction
nve04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
5506234
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
5506234
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
5506234
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nve04147
]
5506234
00536 Glycosaminoglycan binding proteins [BR:
nve00536
]
5506234
Exosome [BR:
nve04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
5506234
Glycosaminoglycan binding proteins [BR:
nve00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
5506234
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
5506234
NCBI-ProteinID:
XP_032230469
LinkDB
All DBs
Position
Unknown
AA seq
871 aa
AA seq
DB search
MQLLLLVFLCICGLSWGQIDWGPGACAQMAKACWPLPKGAQGPPGPPGEAGPAGRRGAPG
PPGPPGPRGYPGRVLTPPPGPPAPKGDRGEPGYPGEPGEGGDVGFPGERGLRGFGGFPGA
KGHKGKEGDTGLPGRRGPPGSSSSNARECMWKMDDGKDRGVIVNCTIQKTSSSTAIHVTY
NGPIEIGLCKRCCKRWFFTFNGQECRSPAPIDAIMSGGLRPDYPHYQYGRVEGICQVPFP
AGYLRVSLNLENCKGFQDSDVPIKVSLYKPNGLVTLHEIVPPHVRSQNIDWRCSSMLQSC
ELNNGIIGLKGNQGFPGPMGLDGIPGIPGPPGDRGDPGTSPRVPPFPYWHRVKGAKGEIG
FPGIKGEKGLKGFPGTPGDQGRQGVPGKRGYDGAKGREGEDGANGPPGSPGSANMNWKQC
VFELELNKQNGIIYECRFLKYSNVTSLRISYHGDTQIGLCGSCCKHWRFLLDGQPCWSPG
PIDATYSGLMLVNVNQRNTLPVFRHGTISGYCNSLPRGVVRVALDLSNCPGYPSDSIVVS
TEVVATGRIIIEEVPAPQARTLIGYRMMNFSCFCLLWVVMLINIVSCQREKGQRPTPMFW
GIDNCNKLEENCGMRFQGSKGTPGAPGDPGLYGPPGPPGKKGPKGPKGRTAILPNKAMIG
AIPPFYGPKGDRGVPGRQGMYGLRGPPGRKGDQGTRGPPGLNGPTGAQGDSGFPGVPGPK
GFPGGIGSVRSWKSCTWKFDPTQEYGLVKECDFVKHHSATLLRVTYEGSMRTGFCTKCCK
RWYFTFNLEECSAPHRIEARLEGLKDHPFPEYRHDQLDGQCVLPQGRVNVGLWVEDCTGH
TRSPKSNITLVDMSGRMFIEEVDVVQSNNRI
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgcagttgcttctgttggtattcctgtgcatttgtggactaagctggggccaaatagac
tggggtccaggcgcctgcgcccagatggccaaggcctgctggccccttccgaagggcgct
cagggaccacccggaccgccaggcgaggctggtccagccgggcgtcgaggggcaccaggt
ccacccggtccccccggccctcgggggtatcctggtagagtccttacaccaccaccagga
cctccagctccgaaaggagatcgcggtgaacccgggtatccaggagaacccggagaaggt
ggagatgtcgggttccccggtgagcggggacttcgagggtttgggggatttccgggagct
aagggtcacaaagggaaagaaggtgatacaggattaccgggaagacgggggcccccggga
tctagcagctcaaatgcccgcgagtgtatgtggaagatggatgacggcaaggatagagga
gttatagtgaactgtaccatccaaaagacgtcctcttccaccgccattcacgtgacctac
aacggaccaatagaaatcggcctctgtaaacgttgctgcaagcgttggttcttcacgttc
aatggtcaggaatgccgcagccctgcgcctatcgacgccataatgtcaggggggctacga
ccagactaccctcattaccagtatgggagggtggagggaatctgccaggtcccttttccc
gcgggatatctgcgggtttcattgaatttagagaattgtaagggctttcaggattcggat
gtccccataaaggtctccctgtataaaccgaatggattggttacattacatgaaatagta
cccccgcatgttagaagtcaaaacatagactggaggtgtagttcgatgcttcaatcgtgt
gaactcaacaacggaataattggactaaaaggaaaccagggctttcctggacccatgggg
ctggatggcataccaggtattcccggtcctcctggcgatcgaggggacccaggaacgtcc
ccaagggtacccccttttccatactggcaccgcgtcaaaggcgccaaaggggagatagga
tttccagggatcaagggagaaaaaggcttgaaagggtttccaggaactccaggtgaccag
ggcaggcaaggagtaccaggaaaaagaggttatgatggggctaaagggcgtgaaggggaa
gatggtgcgaacggtcctccaggaagtcctgggtctgccaacatgaactggaaacagtgc
gtgtttgagttggagctcaataaacagaacggaattatatatgaatgccgcttcctaaag
tacagcaacgtcacctcgctgcgtatcagttaccatggcgacacgcagataggtctgtgc
ggttcgtgctgcaagcactggcgttttctattggatggccagccctgctggtcaccaggc
cccatagacgcgacatacagtgggctcatgttagtcaacgtcaaccagaggaacacactt
ccggtttttcgccatggcaccatttccggctactgcaattctcttcccaggggggtagtg
agggttgcattagatttgtctaactgcccagggtacccctctgattctatcgtagttagc
accgaggttgttgcgacagggagaattattatcgaagaagtccccgccccacaagcacgc
actctcatcggatacagaatgatgaacttttcctgcttctgtttgctttgggtagtgatg
ctaataaacatcgtctcatgtcagagagagaagggacagaggccgacgccaatgttctgg
ggaatcgataactgtaacaagcttgaagaaaattgcggtatgaggttccaaggctctaaa
ggcactccaggcgcacctggtgatccaggcctatatgggccaccaggaccaccaggcaaa
aagggtccaaagggtcccaagggacgaaccgccatactccctaacaaagcaatgataggt
gcgataccaccattttacggtcctaaaggagataggggagtacccgggagacaaggcatg
tatggactaagaggccctcctggacgaaaaggggaccaagggacacgtggcccccctggc
ttgaatgggcctacgggggcacaaggagactctggcttccctggggtacctggaccaaaa
ggcttccctggggggatagggtctgtcaggtcatggaaaagctgcacatggaagtttgac
cccacccaagagtatggactcgtgaaggaatgcgattttgtcaagcaccactcggccacg
ctactccgcgtgacgtatgaggggagcatgcgcactgggttctgtaccaagtgttgcaag
aggtggtatttcacctttaacctggaggagtgttcggcaccacatcggatcgaggcgaga
ctagagggcttgaaggaccacccttttcccgaataccgacatgaccagctagatgggcag
tgtgtactaccacaaggaagggtcaacgtcgggttatgggtagaggactgcacaggccac
acgcggtctcccaagtctaatatcactttagtggacatgtcaggaagaatgttcatagag
gaagtagatgttgtgcagagtaataataggatttag
DBGET
integrated database retrieval system
