Nematostella vectensis (starlet sea anemone): 5506282
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Entry
5506282 CDS
T01037
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
nve
Nematostella vectensis (starlet sea anemone)
Pathway
nve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
5506282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nve03019
]
5506282
Messenger RNA biogenesis [BR:
nve03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
5506282
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
5506282
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
5506282
NCBI-ProteinID:
XP_001627004
UniProt:
A7SMZ0
LinkDB
All DBs
Position
Unknown
AA seq
289 aa
AA seq
DB search
MADAQLSVYEREFIISGAEQDYRSDGRSCEDYRYFEVETGIVSNTSGSARLRLSDTDILV
GVKAEIGEPNLLTPGCGRVEFFVDCSSNASVEFNGRSGDDLAADLMRSLDRTYSNKSAID
LSSLSIIHGQQCWVLYVDTLVLECGGNLYDALSLAVKAALYNTRIPNVTVSSDGGEVELE
ISDDPYDCHQLPPDQMPIIITLSKIGGRHVVDASQSEELCSDCHLLVAVNSCGNVCGQQK
IGCGGLEPDTICEMLETARSVGKRVNNALIRVLKEGEAVVDTEKVGFLR
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcacaactctctgtttacgagagagagttcattatcagcggcgcggagcaa
gattaccgctcggatggtagaagctgtgaagattatcggtattttgaagtagaaactggt
atagtgtcaaacactagtgggtctgcacgacttcgattgtctgatacagatatattagtc
ggagtcaaagcggagataggtgaaccaaacctcttgacaccaggatgtggtcgggttgag
ttttttgttgactgttcatcgaatgcttcagtggagtttaatggacgatcaggtgatgat
cttgcagctgacttgatgcgcagtttggaccgaacttactcaaataaatcggccattgat
ctgtcatcattgtcaatcatccatggacaacagtgttgggtcttgtatgttgatactctg
gtcttagaatgtggaggaaatttgtatgatgccctttcactagccgtgaaagcagctctt
tataataccagaattcccaatgtgacagtctccagtgatggtggggaagttgaacttgag
atatctgatgacccatatgattgccatcagctcccccctgaccaaatgccaatcattatt
acactgtctaagattggaggtcgtcacgtggtcgacgctagtcaatcagaagagctctgt
agcgactgtcatcttcttgttgcggttaactcatgcgggaatgtatgcggtcagcagaag
attggctgcggtggactggaaccggacacaatatgcgagatgctagagacagctcggtcg
gttggcaaaagagtgaacaacgctctgattcgagttctgaaggaaggggaggccgttgtg
gacacagagaaagtaggatttcttagatag
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