Nematostella vectensis (starlet sea anemone): 5508827
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Entry
5508827 CDS
T01037
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
nve
Nematostella vectensis (starlet sea anemone)
Pathway
nve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
5508827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nve03019
]
5508827
03041 Spliceosome [BR:
nve03041
]
5508827
Messenger RNA biogenesis [BR:
nve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
5508827
Spliceosome [BR:
nve03041
]
Complex B
Other components
Prp19-related factors
5508827
Complex C
5508827
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
TPR_8
TPR_12
ARM_TT21_C
ARM_TT21
RPN7
TPR_1
TPR_MalT
NRDE-2
Motif
Other DBs
NCBI-GeneID:
5508827
NCBI-ProteinID:
XP_032233529
LinkDB
All DBs
Position
Unknown
AA seq
849 aa
AA seq
DB search
MPELARPKKNQNLIIEEEDLPYEEEILRNPFSVKCWQRYVEHKTKTGSRSAVNMIYERAL
KELPGSYKLWYNYLKIRRKQVKGRPVKDPLYEEVNNAFERSLVFMHKMPRIWLDYCQFLV
DQCKITKTRRTFDRALRALPITQHYRIWPLYLKFVRMYPVYETAVRVYRRYLKLEPENTE
GYINYLLSIGWMDEAARRLANIVNKEDFVSKEGKSSHQLWHELCEIISKNPDKVKSLKVA
DIIRGGLRRFTDSLGQLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFGQVFDAYAQ
FEESMISAKMETTAEMGATEEEDIDLELRLARFEHLMDRRPLLLSSVLLRQNPHNVHEWH
KRVKLYDGKPKEIINTFTEAVQTVDPKLATGKPHTLWVEFARFYEKHNQLAEARVIFDKA
TKVNYRHVDDLASVWCEVAEMEIRHENYSKALELIRKATAVPSTKTNYYDESETVQKRVH
KSLKLWSMYADLEESLGTFQSTKAVYGRILDLRIANPQIIINYAMFLEEHRYFEESFKVY
ERGVAMFKWPNVFDIWNTYLSKFIKRYGGTKLERSRDLFEQVLDGCPAKFAKAFLLMYAM
MEEEHGXARHAMAIYDRATKAVLPEEKFEMFNLYIKRAAEIFGVTHTREIYEKAIEVLPD
DDAREMCIRFAELERKLGEIDRARAVYMHASQISDPRRTPSFWKTWHEFEVHHGNEDTFR
EMLRIKRSVQAQFNTQVNFMSAQMLAAATGKPVGEVDELAQSDEMQKLEQMQAAKEPVQP
KEKVLFVRGGTTEEESDEATQATNPEEIDIDDDDDDDEENEETATKSEVRLEQRAIPSEV
FGGLAKEDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccggagttagcaagacctaagaagaaccaaaacttaataatcgaggaagaagatcta
ccgtacgaggaggaaatcctgcgaaatcctttttctgtgaagtgttggcagagatatgtc
gagcacaagactaagacaggatcccgctctgcggtcaacatgatctatgagcgtgcacta
aaagaacttccaggaagttataagttgtggtataactacctcaagatccgccggaagcaa
gtaaaggggagaccagtgaaggatcctttgtacgaagaagtgaataatgcatttgagaga
tcactagtcttcatgcataagatgccgaggatttggcttgactactgtcaattccttgtc
gatcaatgcaagataacaaagacacgcaggacgtttgaccgtgccctgcgtgccctacca
atcacacagcactacaggatatggcccttgtatctgaagtttgtacgcatgtacccagtc
tatgagactgcagttagagtgtaccgacgatacttgaagctcgaaccggaaaacactgaa
ggatacataaactaccttttgtctattgggtggatggatgaggctgcgaggaggcttgca
aacattgtcaacaaggaggactttgtttcaaaggaagggaaatccagtcaccagctgtgg
catgagttgtgtgaaattatttccaagaacccagataaggtaaaaagtctgaaagtggca
gacatcatccgaggagggctgagaagattcaccgacagcttgggccaactctggtgctcc
cttgctgattattacatcagaagtggccactttgaaaaggcaagagatgtatacgaggaa
gcaatacagaccgttatgactgtccgcgattttggccaggtgtttgatgcatatgcccag
tttgaggagagcatgatcagtgcgaagatggagaccacagcagagatgggagccacggag
gaagaggacatagacctagagctgagattggctcgatttgaacacctaatggacagacgg
cctctacttcttagcagcgtgctcctcagacagaatccccacaacgtccacgaatggcac
aagcgcgtcaagctgtacgacggcaaacccaaagaaatcatcaacacattcacagaagcc
gtgcaaacggtcgaccccaaactcgccacagggaaaccccacacgctgtgggtagaattc
gcgcgcttttacgagaagcacaaccagttggcagaggcgcgagtcatcttcgacaaagcg
actaaagtgaactatcgtcacgtggacgacctggcgagtgtgtggtgtgaggtagcggag
atggagatacgtcacgaaaattactcgaaggctctcgagctgatacgaaaagcaacagca
gtaccatcaacgaagacaaactactatgacgagtccgagactgtgcagaaacgtgtccac
aagtcgctaaagctgtggtcaatgtacgcggatctggaagagagcctgggcacgttccag
tccaccaaagccgtgtacggtcgcatcctcgacttgcggattgccaaccctcagataatc
atcaactacgccatgttccttgaggagcataggtattttgaggagagcttcaaggtttat
gagcgtggtgtcgccatgttcaagtggccaaatgtgtttgacatttggaacacatacctc
agcaaatttatcaagagatatggagggacgaaactagaaagatcacgagatcttttcgaa
caagtccttgatggatgcccggctaagtttgccaaagccttcttattaatgtacgctatg
atggaggaggagcacggtnntgctcgtcatgcgatggcgatctacgatagagctacgaaa
gccgtgcttccggaagagaagttcgagatgttcaacctatacatcaagcgagccgcggaa
atattcggcgtcactcacaccagagaaatctacgaaaaggccattgaagtgcttccagac
gatgacgcaagggagatgtgcatccgctttgccgagcttgagcgtaaacttggggaaatc
gaccgcgcacgggctgtttacatgcatgcctcacagatatctgacccacggcgcacgccg
tcgttctggaagacgtggcacgagtttgaagtgcatcatgggaacgaggacacgttccga
gaaatgcttcgaattaaacgcagtgtgcaagcccaattcaacacccaggttaacttcatg
tcggcgcaaatgctagctgcggcaactggcaagccagtaggtgaggtggacgaattggct
caatctgatgagatgcaaaagctggagcagatgcaagcggccaaggagcccgtgcagccc
aaggagaaagtgctctttgtcagggggggtacaacagaggaagaatcagacgaagcgacg
caagcaacaaatcccgaggagattgacatcgatgatgacgacgacgacgatgaagaaaac
gaggaaaccgctacgaaaagtgaagttcgtttggagcaacgtgcgataccaagcgaggta
ttcggaggtctggccaaggaggatgactaa
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integrated database retrieval system
