Nematostella vectensis (starlet sea anemone): 5509850
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Entry
5509850 CDS
T01037
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
nve
Nematostella vectensis (starlet sea anemone)
Pathway
nve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
5509850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nve03019
]
5509850
Messenger RNA biogenesis [BR:
nve03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
5509850
mRNA degradation factors
5'-3' decay
Decapping complex
5509850
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
5509850
NCBI-ProteinID:
XP_032234778
LinkDB
All DBs
Position
Unknown
AA seq
833 aa
AA seq
DB search
MAGESFFGFNTQMPSFEDEELEKLDPTLKNLDDDYDLLNEDTFGSGALEDDWEIAHKKLA
GIDLDKATNQSLVSKNEQCRQKVGVTDDDDDDEANLEQEEEILEQTLAKLVDEDDDTPKP
YTSSGYKDIPTMPSAWNGSSPLSSPTSATSLQELISPSSNIWASPDRVNKERVVDALSGN
RVLYDRKHTPGRRPYSPAFEDDAIIKAMPKPENLLPPSSFIKKPPVNAIRLEDLEKEFSH
NTPPRAQVDPRIATPSSGRIRPPPGIPHPLMTPQGYMQGSTSPNIMQRTPQGPGMVRGQP
HPMMTPQRPPSPNMMRHTPQGPVMQQHRPYPMPPQMFQGRQMAGKHPLPSMGSPIQGFMR
TPPPQFQRPPVPMMHSDPAHLMHHGNMMNYQMNQRHRYSTPQPHPNQYRNFPNNRNQYDR
NFQDRRGHYLDDNRHVHQQTDLEKKIHEILTCDEHMAAHDPYAGLMTRREKEWIIKIQLL
QLTSSTPDLDDFYFQTYIRRKQAKERAKQGERRDGENTTQMALPQFEREERNYKPLDFQG
TLGKVSASSVSHPRQMVAIDHISKASEQDKQSSSSTKDIKRRRQILSAIEKAYEYLLQLD
DLERKITHVHPEERNSLLEAQQSTGLKLFNLLKLNIRSESIGGKCDEEYFVQLMSVRKGK
VLLSRVLPALKQPQAEAVLLALTRNVISVIKKDSQDEVLPVLITPVSRVVDQGSSAVLYE
SLRHMVYADDTSALHTILPNQFGASLLNSLLKSCSSLSSSMDESMGDFHQLWEKLVSDVV
KEFHSVPVTLLAKNVLAITPFVGTLCECTSPDVSTSLQEHYRNAILTKEESKK
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgaatctttttttggattcaacacgcaaatgccatctttcgaagacgaggaa
ttagaaaaacttgaccccactttgaagaacttggatgatgactatgatttgcttaacgaa
gatacttttggctccggagcactagaggatgactgggagattgcgcacaagaagcttgca
ggtattgaccttgacaaagcaacaaatcaatccttagtcagcaagaacgagcagtgtcgt
cagaaagttggtgtgaccgatgatgatgatgatgatgaggctaacttggaacaggaagag
gagattctcgagcagaccctggctaagttggttgatgaggatgatgatacccctaagcca
tacacatcatctggatataaggatattcccactatgccatctgcttggaatgggtcttct
ccattatccagcccgacatcagccacatctctacaagaactgatttctccttcttctaac
atctgggcttcccctgatcgtgttaacaaagaacgggttgttgatgcattgtcaggcaat
cgggtcctctatgacagaaaacacacccctggtcgacgcccttactctccagcatttgag
gatgatgctattatcaaagctatgccaaagccagaaaacctcctacctcctagcagcttt
atcaaaaagccacccgtcaacgctattcgccttgaagaccttgaaaaggagttctcccat
aacactccaccaagagcccaagtagatcctaggatagcaacaccctcttcaggcagaatc
agaccgccacctggaataccacacccattaatgacaccccagggctacatgcaaggttcg
acgtcacccaacattatgcagcgcactccacagggaccaggcatggttagggggcagcca
cacccaatgatgacacctcagaggccaccatcacctaacatgatgcgtcacacccctcag
gggcctgtcatgcagcagcatcgaccctatccaatgccccctcagatgttccaagggcgg
cagatggcaggcaagcacccccttcccagtatgggcagcccaatacagggctttatgcgc
acccctccaccgcagttccagaggccgcctgttcccatgatgcactctgatccagcgcac
ttgatgcaccatggtaacatgatgaactaccagatgaaccagcgacaccgctactcaaca
cctcagccacaccccaatcaatacaggaacttcccaaacaaccgcaaccagtacgaccga
aacttccaagacaggcgtggccattaccttgatgacaatcgtcacgtccaccaacagacg
gacttagagaagaagatccatgagatactgacatgtgacgagcatatggcagcgcatgat
ccatatgctgggttaatgaccaggcgagagaaagagtggatcatcaaaatacagttgttg
cagctaacaagtagcacgccagatctggatgacttttatttccagacttacatcagacgc
aagcaggccaaagagagggctaaacagggtgagaggcgagatggtgagaacacaacacag
atggctctaccgcagtttgagagagaagagaggaactataagccattggatttccaagga
actcttggaaaggtctctgcttcatctgtatctcatccaagacagatggttgccatcgac
cacatcagcaaggcttcagaacaggataagcagtccagctcatcaacaaaagacatcaaa
cgtcgacgtcagatattatcagccattgagaaggcttatgagtacctactccaactggat
gatctagaacggaagataacacacgtccatccagaagaaaggaattctctactggaggcg
caacagtccactggtctgaagcttttcaacctgctaaagctcaacattcgctcagagtct
atagggggaaaatgcgatgaagagtactttgtgcagttgatgtcagtgaggaagggcaag
gtgctactaagtcgtgtgctaccagccttgaagcagccccaagcggaggcagttctgctg
gcattaacacgaaatgtcatttctgttattaagaaagatagccaagatgaggttttaccg
gtgttaatcactcctgtgtcacgtgtcgtggaccaaggatcatcagcagtactgtacgag
tctctccggcacatggtctatgcagacgacacctcagcacttcacaccattctacctaat
caattcggcgctagtctattaaactctcttctgaagtcgtgctcttcactctcaagttca
atggacgaaagcatgggtgacttccatcagttatgggaaaagttagtaagtgatgttgtc
aaggagttccacagtgttcctgtcactctgcttgccaagaatgtgctagcaattactccc
tttgtgggaacgctgtgtgaatgtacgagtcccgatgtttcgacaagcttacaggaacac
tataggaatgctattctaactaaagaagaatcaaagaagtaa
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