Nematostella vectensis (starlet sea anemone): 5511242
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Entry
5511242 CDS
T01037
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
nve
Nematostella vectensis (starlet sea anemone)
Pathway
nve03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
5511242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nve03021
]
5511242
03019 Messenger RNA biogenesis [BR:
nve03019
]
5511242
Transcription machinery [BR:
nve03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
5511242
Messenger RNA biogenesis [BR:
nve03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
5511242
U7-dependent histone pre-mRNA processing factors
5511242
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Ephrin_lbd
DUF7928
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
5511242
NCBI-ProteinID:
XP_032236438
LinkDB
All DBs
Position
Unknown
AA seq
688 aa
AA seq
DB search
MAASVKRKADSVIPPEESDLLRITPLGSGQEVGRSCHILEFKGKKVMLDCGIHPGMTGVE
SLPFLDEIDTAEIDLLLVSHFHLDHCGSLPWLLEKTTFKGRVFMTHATKAIYRWLLSDYV
KVSNIAAEDMLFTESDLEKSMDKIETLHFHQEKEVGGIKFWCYHAGHVLGACMFMLEIAG
VKILYTGDFSRQEDRHLMAAEIPSISPDVLIIESTYGTHIHEKREEREARFTGTVHDIVN
RGGRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASQLAKKCMSVFQTYVNAMND
KIKKQIAISNPFVFKHISNLKSIDQFDDIGPSVVMASPGMMQSGLSRELFEQWCTDRRNG
VIIAGYCVEGTLAKNLMSEPEEVQTMSGQKIPRKCSVDYISFSAHTDFEQTSEFIRILKP
PHIVLVHGEQNEMGRLKAALIREYEDKSEVSLVVHNPPNCQSVELYFRGEKMAKVMGQMA
REKPEHGKPLSGILIKRGFNYHLIAPDDLQNYTELATSVLTQKQSVAFHGAFSVLKQCLE
NLAGRLDEVTIQGKSAVRVFGAITVMHEKSSVLIEWVANSVNDMYADAVLAVVLQVESNP
TAAQAAANLKKIDVHTFTDKLMALLQATYGSKQVSLSALGDEITVEYDGNKALINLDTLD
VECEDESLDHHVSCAVKRLHSAFTPIFS
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtccgtaaagcgaaaggctgacagcgttattccgccagaagagagcgatttg
ctgcgcattacacctttaggttcaggtcaagaagttggaaggtcatgtcacatcttggaa
ttcaagggaaagaaagttatgctggattgtggcatccaccctggtatgactggagtcgaa
tctctaccctttctggacgagattgatactgcagagattgaccttcttcttgtcagtcat
tttcatcttgatcactgtgggtccttaccatggcttctcgaaaagacaaccttcaaaggc
agagtattcatgacacatgcaacaaaagccatctaccgatggttattatcagattatgtc
aaagtcagcaatattgctgcagaagacatgttattcactgaatctgatttggaaaagagc
atggataagattgaaactctgcattttcaccaggagaaagaggttggaggtatcaagttt
tggtgttaccatgccggccatgtgctgggagcatgcatgttcatgctggagattgcaggt
gttaagatattatacacaggggatttctcaagacaggaagataggcatttaatggctgct
gagattccatcaatctcccctgacgtcctcattattgaatcgacatatggtactcacatc
catgaaaaacgtgaagaacgagaagcaagattcacaggcactgtccatgatattgtgaac
agagggggtcgctgtcttatacctgtctttgccttgggtcgcgctcaggaattacttctt
atcttagatgaatactggcagaatcacccagaactccatgacatcccaatatactatgca
tcacagcttgccaagaaatgcatgtcagtcttccagacttatgtgaatgccatgaatgac
aagatcaaaaaacagattgccatatcaaacccatttgtattcaagcacatctcaaaccta
aagagcatagatcaatttgatgacattggcccctctgtggtcatggctagtccaggaatg
atgcagagtggtttgtcacgagagctgtttgagcagtggtgcaccgaccgccgcaacggt
gtgattattgctggttactgtgtagaggggacgctggcaaagaaccttatgtctgaacct
gaagaagtgcagacaatgtctggacagaagattcctcgcaagtgttcagtagattacata
tcattttctgcccacactgatttcgaacagacgagcgagttcatacgaatcctgaaacct
cctcatattgttctcgttcatggggaacagaatgagatgggccgcctcaaagctgcccta
atacgtgaatatgaggacaaatcggaggtcagtcttgtcgttcataatcctcccaactgc
cagagcgtcgagctctacttccgaggagagaaaatggccaaggtgatgggtcagatggct
cgtgagaagccagagcatggcaagcctttgtcagggatactcatcaagcgaggcttcaac
taccacctcattgcacctgacgacttacagaactatactgagctggctactagcgtgctc
acgcagaaacagtcggtcgctttccatggtgcattctctgtactgaagcagtgtctggag
aaccttgctggtcgacttgacgaggtcactatacaaggcaagagcgcggtgcgagtgttt
ggtgcgatcacggtcatgcatgaaaagagtagcgtccttattgagtgggtggcgaattct
gtgaacgacatgtatgccgacgcagtcctagctgttgtgctacaagtggaatctaaccca
acagctgcgcaagctgctgcaaacttgaagaagatcgatgtccacacattcactgacaaa
ctcatggcactgctgcaagcaacttacggatcaaagcaagtgtctttatctgcccttgga
gatgagataactgttgagtacgacgggaacaaggccctcattaatctggacaccctggac
gtcgagtgtgaagacgagagcctggatcatcacgtgagctgcgcagtaaagcgccttcac
tccgccttcacgcccatcttcagctga
DBGET
integrated database retrieval system
