Nematostella vectensis (starlet sea anemone): 5511617
Help
Entry
5511617 CDS
T01037
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
nve
Nematostella vectensis (starlet sea anemone)
Pathway
nve03020
RNA polymerase
nve03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
5511617
09124 Replication and repair
03420 Nucleotide excision repair
5511617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nve03021
]
5511617
03400 DNA repair and recombination proteins [BR:
nve03400
]
5511617
Enzymes [BR:
nve01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
5511617
Transcription machinery [BR:
nve03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
5511617
DNA repair and recombination proteins [BR:
nve03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
5511617
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
EutB
Motif
Other DBs
NCBI-GeneID:
5511617
NCBI-ProteinID:
XP_032236944
LinkDB
All DBs
Position
Unknown
AA seq
1925 aa
AA seq
DB search
MALVSGSPAPLRDVKRVQFGILSPDEIKQMSVTTDGGVKYSETMEGGRPKLNGLMDPRQG
TIDRFSRCQTCAGNMTECPGHFGHIELAKPVFHVGFMTKIVKTLRCVCFYCSKLLVDLNN
PRVKEILSKSHGQPRKRMMHMYDLCKGKNICEGGDEVDAGVLAQDNPNEAEKKLNHGGCG
RYQPKFRKTALELTAEWKHVNEDANEKKITLTAERVYEIFKRISDEECNALGMDPKNARP
DWMIVTVLPVPPLPVRPSIVLSGTARSQDDLTHKLADIVKANNNLRRNELNGAAAHIIAE
DTRLLQYHVATLTDNEIPGLPRAMQKSGRPLKSVKQRLKSKEGRIRGNLMGKRVDFSARA
VITPDPNLSIDQVGVPRTIAQNLTFPEIVTPFNIDSMQELVRRGNNQYPGAKYIIRDNGE
RVDLRFHPKPSDLHLQFGYKVERHIRDNDVIIFNRQPTLHKMSMMGHRVKILPWSTFRLN
LSVTTPYNADFDGDEMNLHVPQSLESKAEITEIMMVPRNIVTPQSNKPVMGIVQDSLTAV
RKFTKRDVFIEKDAMMNLLMWIPTWDGKIPQPAILKPRPLWTGKQICSMIIPGNVNVIRT
HSTHPDDEDSGPYKHISPGDTKVLIEHGELLTGILCKKSLGTSSGSLIHIIAMELGHDIA
RMFYSDVQCVVNNWLLLEGHSIGIGDCIADSDTYDEIQRATKKAKKEVIEVIEKAHNDEL
EPTPGNTLRQTFENQVNRILNDCRDKTGGSAQKSLSEFNNFKAMVVAGSKGSKINISQVI
AVVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEGLSVAYDGTVRNSNNQLIQLRYGEDGMDGIAIEFQN
MPTMRPSKTAFERKFHFDPTNDRWMTRYLQEDLVRDLSGSATALQELEGEFNKLQEDREI
LRKIQPSGNARVALPVNLSRLIWNAQKTFHITNRSASDLHPLRVIEGVRELSKKLVIVAG
EDHISKQAQFNATLLFNILLRSTLCTKRVAEEFHLSSEAFEWLLGEIETRFNHSHVKPGE
MVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLIG
QAARDAEMAKAVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQDFVNVYYEMPDFDVA
RISPWLLRIELDRKRMTDKKLTMEQISEKINLGFGDDLNCIFNDDNAEKLVLRIRIMNND
DGKMQDDEDVDKMDDDVFLRCIEANMLTDMTLQGIESISKVYMNLPHEDKKKRIVVTEQG
EFKAIQEWLLETDGVSLMRVLSERDVDPVRTTSNDICEIFSVLGIEAVRKAVEREMDHVI
SFDGSYVNYRHLALLCDIMTCRGHLMAITRHGINRQEVGALMRSSFEETVDVLMDAAAHA
ETDYLRGVSECIIMGKLPRIGTGSFDLMLDAEKCKHGMEIPTNIMGPGMGGAMAAIGVFF
GAAGSPSAMSPQMTPWNMGATPAYMEAWSPGMGSGMTPGAASFSPSAASDASGMSPGGFS
PSWMSPTPGSPVSPGPTSPYIPSPAAASPGYSPSSPAFMPSSPSMSPASPSYSPTSPGYS
PSSPSSGYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPQSPSYASPSSPKYSPASPSYSPT
SPKYSPTSPNYSPASPSYSPSSPKYSPTSPSYTPASPSYSPASPSYSPSSPSYSPSSPRY
TPTSPQYSPTSPKYSPASPNYSPTTPSYTPMSGXHSPTSPQYSPASTGPSPSPEYSPSSP
NYTPK
NT seq
5778 nt
NT seq
+upstream
nt +downstream
nt
atggccttggtttcggggtcgccggccccgctaagggacgtaaaacgggttcaattcgga
atccttagtccagacgaaataaaacaaatgtctgtgacaacggatggtggagtaaaatac
tccgaaacgatggaaggaggccgaccaaagctcaacggcttgatggatccacgacaaggg
acgatcgatcggttttctcgatgtcagacatgtgcaggaaatatgaccgaatgtccaggc
cattttggccacatcgagctagccaaaccagtcttccacgtcggattcatgaccaagata
gtcaaaactctccgttgcgtgtgcttttactgttccaagctccttgtagacttgaataat
ccaagagtgaaagagatcctctctaaatctcatggccagccacgcaaaagaatgatgcac
atgtatgacctgtgcaaaggcaagaacatctgtgagggaggggatgaggtggatgccggc
gtacttgcacaagacaaccccaatgaggctgagaaaaagctgaaccatggaggttgtggt
cgataccaaccaaagttcaggaaaactgccttagagctgactgctgaatggaagcatgtc
aatgaagatgccaatgagaagaaaataactctaactgcagagagagtttatgagatcttc
aagcgcatatcagatgaggagtgcaatgctcttggtatggatcccaagaatgctcgccct
gattggatgattgtgactgtgctaccagtcccccctctgccagtgcgaccatccatagtg
ctgagtgggacagctaggagccaggatgacttgacacacaaacttgccgatattgtaaaa
gcaaacaacaacctccgccgcaatgagctcaatggtgctgcggctcacatcattgccgaa
gacacccgtctcttacagtatcacgttgcaactctaacggataatgaaattcctggatta
cctagggccatgcagaagtcgggccgtccactgaaatcagtaaagcaacgtctgaagagt
aaagaaggccgtattcgtggtaacttgatgggcaagcgtgtagatttctctgcgcgtgct
gttatcacaccagaccctaacctgagtattgaccaagttggagtgcctcgaaccattgcc
cagaatctcaccttccccgagatagtcactcccttcaacattgacagcatgcaagaattg
gttcgccgtggtaacaaccagtaccctggtgcaaagtacatcatccgtgacaatggagag
cgtgttgatctgcgtttccaccccaaacctagcgacctccatctccagtttggctacaag
gttgaaagacatatccgggataatgacgtcatcatcttcaaccgacaaccaacactccat
aaaatgtccatgatgggacatagagtgaagatcttgccgtggtcaacttttaggcttaac
ctcagtgtgacaactccatacaatgcagattttgatggagatgagatgaatctccatgta
ccccagtccctggagtccaaagctgagattacagagatcatgatggtacccaggaatatc
gtaactccacaatcaaataaacctgtcatgggaatcgtacaggactctctcacagctgtc
aggaagttcaccaagagagatgtgtttatagaaaaggatgccatgatgaaccttcttatg
tggatcccaacttgggacggcaagatcccccagccggccatcctaaagccgcgcccactt
tggacgggaaagcagatttgcagcatgatcatccctggtaatgtgaacgtgatccgaaca
catagcacccaccctgatgatgaggattcagggccctacaagcatatctcccccggcgac
accaaggttctgattgagcatggtgagcttctcacaggaatcctctgcaaaaagagtctt
gggacttcttctggcagtttgatccatatcattgccatggaactggggcatgacatcgcc
cgtatgttctacagtgatgtccagtgtgtggtgaacaactggctgcttcttgagggacat
agtattggtattggagattgtattgctgactcagacacctatgacgagattcagagagcc
accaaaaaagctaagaaagaggtgatagaggtgattgaaaaagctcataatgacgaactt
gagcctacgccaggcaacaccctccggcagacatttgagaaccaagttaatcgcattttg
aacgactgtcgtgacaagactggaggaagtgcacagaagagcttgtctgagttcaacaac
ttcaaggctatggtggtcgctggctctaaaggatcaaagattaacatttcccaggttatt
gctgttgtaggccaacagaacgttgaaggaaagcgaatcccctttgggttccgccaccga
acccttcctcacttcattaaggatgattatggtcctgagagtagaggttttgtcgaaaac
tcctaccttgcaggtctaacacccactgaattcttctttcacgctatgggtggtcgtgag
gggttgattgacactgctgtcaagactagtgaaacaggttacatccagagacgtttggtg
aaagctatggaggggctttctgtggcatatgatggaactgtcaggaactccaacaaccag
ctgattcagctgaggtacggagaggacggaatggatggtattgccattgagttccagaac
atgccaaccatgcggccatccaagacagcttttgagagaaagtttcacttcgaccctact
aatgatagatggatgacacgttaccttcaggaagacttggtgcgagatctcagcggcagt
gctaccgccctccaggagctagagggggaattcaataaactccaggaagacagagaaatc
ctgcgcaagatccagccttcaggaaatgctagagtagcccttcccgtgaaccttagcaga
ctgatctggaacgcacagaagaccttccatattacaaacagatctgcaagtgacttacac
ccacttagagtcattgaaggtgtgcgagaactctccaagaagctggttattgtggcaggg
gaagatcacatcagcaagcaagcccagttcaacgccaccctgctgtttaacatactactg
cgctcaacactctgcacaaagcgcgttgctgaggagtttcacttgtcatccgaggcattc
gaatggttactgggagagatcgagacaaggttcaatcactcacatgtaaagcctggcgag
atggtaggtgccctagcggcccaatcccttggtgaacccgccacacagatgaccctgaac
actttccattatgctggtgtatcagccaagaatgtaaccctgggtgtgccccgtctgaag
gagatcatcaacgtgtccaagaagccaaaaacgccctcactcactgtattcctgatcggc
caggcagctagggatgccgagatggcaaaggccgtcctttgccgtttggagcacaccacc
ctccgtaaagtgaccgccaacaccgccatttactatgacccagacccccagaacacagtg
atcgctgaggaccaggacttcgttaacgtctactacgagatgcctgactttgatgtggcc
aggatatcaccatggctgctcaggatcgaactggaccgcaagagaatgacggacaagaag
cttaccatggagcagatctcggagaaaatcaatcttggttttggtgatgatctgaactgt
atcttcaatgacgataacgccgagaagctggtgttgcgaatccgaatcatgaataatgat
gatggcaagatgcaagacgatgaagatgtagacaaaatggatgacgatgtgtttctccgg
tgcattgaagcgaacatgttgacagacatgaccctgcaagggatagagtccatttccaaa
gtgtacatgaatctgccacacgaggacaagaagaaacgcatcgttgtcaccgagcagggc
gagtttaaagcaattcaggagtggctactggagacggacggggtcagcctgatgagggta
ctcagtgagagagatgtggaccccgtgcgcacaacgtcaaatgacatttgtgagatattc
tcggttcttggaattgaggccgtgcgtaaagcagtggaacgtgaaatggaccatgtcatc
tcatttgacggctcctacgtgaattaccggcacttggcgttgttatgcgacatcatgacc
tgccgaggccatctcatggccatcacccggcatggaattaaccgacaagaggttggcgcc
ctcatgaggagttcctttgaggagacagttgacgtcttaatggacgctgccgcccatgca
gaaacagattatctcaggggtgtcagtgagtgtattattatgggaaaacttccgcgaatc
ggcacaggaagctttgacctgatgctggatgcagagaagtgcaaacacggaatggagata
cccacaaatataatggggcctggaatgggcggagctatggctgcaattggcgtgttcttc
ggagctgctggctcgcctagtgctatgtcgccacagatgacaccctggaacatgggggcc
acaccagcatacatggaagcctggagtcctggcatgggaagcggaatgacccctggagct
gctagcttctctccttcggcggcctctgatgctagtggtatgagtcctggtggcttcagc
ccatcttggatgagcccaacgccaggttctccagtgtctccaggtccaacaagcccttac
atcccaagcccagcagctgcaagtccagggtactccccctcaagcccggcctttatgcca
agctcaccatcaatgtcaccagcgagtccatcttactcgccaacatctccaggatactcg
ccttcttcaccatcttcaggctattcacctgctagtccaagttattctccaacatcgcca
tcgtattcaccaacttctccatcctactctccaacctccccatcctacagcccaacttca
ccttcctattcccctacttcacctagctacagcccaacctcccctagctattcccctact
tcaccctcttactctccgacatccccctcatattctcctacctctccttcctactcccca
acatcacccagctactctcctacatctccaagctacagccccacatctccaagctatagc
cctacatctcctagctattccccgacctccccttcttattctcccacctcgccttcatat
tctcctacctctccctcctactctccaacctcacccagctactctcccacatctccaagc
tacagtccttcctccccttcctacagcccctcctcgccatcctattcaccacaatctccg
tcctacgcctccccctcttcccctaagtattcccctgcttctccaagctactcccccaca
tctccaaagtacagcccaacctcgcccaactacagtcccgcctctccctcctactccccc
tcctcgccaaagtactcccccacctctccttcttatacccctgcttccccttcttactct
cccgcttccccctcctacagtccgtcatccccaagctactccccttcctcgcctcgctac
acacccacctcccctcagtactccccaacctcgccaaagtacagccctgcctctcctaac
tactcgccaactactccaagttatactcctatgtctgggncacatagtcccacttctcca
cagtatagtccagcttctactggaccctccccatctcctgaatactcgccctcatcaccc
aactacactccaaagtaa
DBGET
integrated database retrieval system
