Nematostella vectensis (starlet sea anemone): 5512017
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Entry
5512017 CDS
T01037
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
nve
Nematostella vectensis (starlet sea anemone)
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nve03041
]
5512017
Enzymes [BR:
nve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
5512017
Spliceosome [BR:
nve03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
5512017
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
DEAD
R3H
HA2_N
AAA_22
Ank_2
Ank
nSTAND3
Ank_5
AAA_19
ATPase
TsaE
Myosin_head
T2SSE
ResIII
AAA_16
AAA_11
Cas3-like_C_2
SRP54
Ank_3
Motif
Other DBs
NCBI-GeneID:
5512017
NCBI-ProteinID:
XP_032237276
LinkDB
All DBs
Position
Unknown
AA seq
1620 aa
AA seq
DB search
MADKRGPKGLRNQNICVKEEFKIAVKIALDKFRYDETQKELEFPSSFTAVERAYIHRLCL
NLGLKSRSRGKGSNRFLSVSNKEVKAGSSSTQIGLCPSALQVIDSVNKKFPLTQKERQDL
QPRSERQGAPFEYGRRDKFSGKLSSIPPAVPPTTCENELTAFRKSLPIWEQRQDIIKCIK
DNQVILVSGETGSGKTTQVPQFILEYSAQVSSPCRIICTQPRRISAMSVAERVAAERGER
IGQTAGYQIRLESRVSGKTLLTYCTNGVLLRTLMQGDNSLSFITHIIVDEIHERDRFSDF
LLISLRELLSFNKNIKLVLMSAALDIDLFVEYFGKCPVINVPGRCFDVDVLFLEDVLHLT
SYKNKGMERHYKEDGKESFIDKEIQKDLNNLDKVGPFSKQTLDVDLKPCPGVIHLPAGSL
VTTDSSSRMSDELVGEAQGVEEEARLADEEPDNDVDLELAVLGDLELNPVEDDDPEQKIV
EDSQEKGYEQEFPLEEEPTEEELLSSEEEGEGGDDEIIIEADDAHDDEGREDSVKEEESL
VEEMEENKSQGELDDEAYLLQEMDDSISQAWLKGDDDSFVQILHLIMNENISVDYQHSET
QATALMVAAGRGCAAVVEQLLALGANPHIRDPKNNWIAIDWAKKWDHTDVIELLDSNMRS
SHAPYSDDVTLEKQSTELSEETKELLAVYHKTFDDDRVDLDLIYCLIDHICNSGQQGAVL
VFLPGYDDIITLRDILASSKEYGNTKRYQLFTLHSSMQPGEQRKVFRKLPPTVRKIVLST
NIAETSVTIDDVVFVIDSGKVKEKSFDALTSVSTLQVAWVSKASAVQRRGRAGRCSPGTC
YHLFSGVRYESLQPYQIPELLRMPLQELCLHAKLLAGPNTCIADFLAKAPEPPTYLVLRN
AVTLLKTIDALNKWEDLTDLGRHLADLPVEPRLGKMILYSVVLKCLDPVITVACALAYRD
PFVLPMYAAEKRAAAVAKRRFIIDQYSDHLLFVKAFRGWQKARAEGLDKSFCQRNYLSPA
SLEMMSGMKSQIIGHLKTCGFIRPRGAGDLRDLNTNSNNWAVVKAALCAGMYPQIARVDR
LDNKLTTPKETKVRIHTSSILYQAPEKNESQSLSQAKAVKQLPSDWLIYEEMTRMYTSVS
VKCCTAVHPIAVALFAGPSLSAPNLEPGEDKSRDTERRNSEGRWESESSDSDAEESKPGD
KSRDNQAELKVDDWISMLGSDETVELASFLRHKLQIVFMRRIRAPSRPWSQVDETVVRAV
VAVLSAEEERINPELYPKQRRARPESSYESRSRVERQRPGERYSRDRIGRDVRESGASPR
PDSSSNQQGMPRMETSSARSSPVQDKISEARFFIMKCNNQRNLDISMAKGIWATTIANEK
KLNRAFKESKKVVLIFSVQGSGHFQGVAHMTSPIGREKSPEFGSSSLGGVFTVEWITKAN
IPFQQAHHLVNPWNDHKKVQISRDGQELEPSIGAELCKLWEVDHTNTSNRYSRPVSGATN
NSRRGKLPPEGNSGKWQHGIGPVTQQPAVYPTVYAPHAASMPIPVPVPAQHSRQTLLQAY
PRPAMTAPQPIRSQPLYGVHPHMRNSRYPGHVIPAPMQPQSPRGVGSHALRPGSYPQQKR
NT seq
4863 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaaacgcggtccaaaaggactccgtaatcagaatatttgtgtcaaagaagag
tttaagattgctgttaagatcgcattagataaatttcgatatgatgagacacagaaagag
ctggaattcccctcatcgtttacggcggttgagcgggcgtacattcatcggctctgcctc
aacttgggactcaagtcacggagcagaggtaaagggagtaatcgatttctgtcagtctca
aataaagaggtgaaagctggtagttcaagcacccaaattggtttgtgccccagtgccctt
caggttatagactctgtcaacaagaaattccccctcacacaaaaagagagacaggatctt
caacctcggtcagaaagacaaggagcgccattcgaatatggcaggagagataagttctct
ggaaagttgagtagtattccccctgctgtgccgccaacaacatgtgaaaatgagctgacc
gcattccgcaaatcccttccaatatgggaacagaggcaggatattataaagtgtatcaaa
gacaaccaggtcattttagtttctggtgagactggttcaggcaagacgactcaggtccca
cagttcatcttggagtattctgcccaggtatcatccccctgtcgtatcatttgcactcag
ccacgcagaatatcggcaatgtctgtagcggagcgagtagcagcagaacggggcgagaga
attggtcaaacagctggctaccaaatacgcttggagagcagagtttcaggaaagactttg
ttgacttattgcacaaatggtgttttgctgaggaccttgatgcaaggagacaactccctc
tcgttcatcacacatattattgtggatgagattcatgagagagaccggtttagtgacttt
ctcctaatttccctgcgtgaacttctctctttcaacaagaatattaagctagtgctgatg
agtgcagcccttgacattgacctctttgtggaatactttggaaaatgtccagttattaat
gttccaggacggtgtttcgatgttgatgtcctgttcttggaagatgttcttcacttgaca
tcttacaagaacaagggaatggaacgccactacaaggaagatggcaaagagtcatttata
gataaggagatccaaaaagacctgaacaacttggacaaagtcggcccattctccaagcag
acccttgatgttgaccttaagccctgccctggcgtcatccaccttcccgctggatctttg
gtcactacagatagtagctcaaggatgtcagatgagttggttggtgaggctcaaggggtg
gaggaagaagccagactggctgacgaggagcctgataatgatgttgatctggagcttgca
gttctaggagaccttgaattgaatcctgtggaagatgatgatccagaacagaaaattgtg
gaggactcccaagagaagggatatgagcaagaatttccccttgaagaagagccgacagag
gaggaacttctgtccagcgaagaggagggagaaggtggtgatgatgagatcatcatagaa
gctgatgatgcccatgatgatgaggggagagaagattctgtgaaggaggaggagtctctt
gttgaggagatggaggagaataaaagccagggtgagttggatgatgaggcttatcttctt
caagaaatggacgacagcatatctcaagcctggcttaagggtgatgatgactcttttgtt
caaattcttcacttgatcatgaatgaaaacattagtgttgattaccaacactctgagacc
caggccaccgctctgatggttgcggctgggagaggctgtgctgcagttgtggagcagcta
ctggccctgggagcaaatccacacatccgggatcctaaaaacaactggatcgcaattgac
tgggccaagaagtgggaccacacggacgttattgagctccttgactctaacatgcgttcg
tcccatgcaccttacagcgatgacgtcaccctcgagaaacagagcaccgagctgagtgaa
gagaccaaggaactgcttgctgtctatcacaagacttttgatgatgatcgggttgacctg
gatctaatatattgcctcatagaccacatatgcaactctggacaacagggagccgtgctg
gtctttctcccaggctatgatgatatcatcacacttcgcgacatccttgcaagcagcaaa
gagtatggcaataccaaacggtaccagctgtttacacttcactcgtctatgcaacctggc
gagcaaagaaaggtcttcagaaaactgccacctaccgtacgcaagattgttttatccact
aacatcgcggagaccagtgtgaccatagacgatgtggtgttcgtcatcgactctggaaaa
gtgaaagagaaatcgtttgacgctctcacgtcagtatctaccctacaagtggcgtgggtg
tctaaagcaagcgcagttcaaaggcgtggcagagctggtcgttgttctcctggcacatgt
taccatttgtttagcggcgtgcggtatgagagcttacagccgtaccagatacctgaactg
ctgaggatgccgctacaggagctgtgccttcatgctaagcttctggcaggaccaaatacc
tgtattgctgatttcctggccaaagcaccagaacccccaacttatctggtgctgcgtaac
gctgtcacacttcttaagacaattgatgctctcaacaaatgggaagatcttactgacctc
ggccggcaccttgcagatctccctgtggagccccgcctcggcaagatgatcctgtactca
gtggtgctgaagtgtctggatcccgtgatcacggtggcttgtgcacttgcttatcgcgac
cctttcgttcttcccatgtacgccgccgagaagagagctgctgcggtggcaaaaaggaga
ttcatcatagaccagtacagcgaccaccttctcttcgtcaaggcctttaggggctggcag
aaagcacgtgccgaggggttagacaagagcttctgtcagcggaattacttatcacccgcc
tcactggagatgatgtcaggcatgaagtctcagattatcgggcacctcaagacctgtggt
tttatccggccgcgcggtgcaggagacctcagggacctgaacactaactctaacaactgg
gcagttgtgaaggctgcgctttgtgcaggcatgtacccccagatcgcccgtgtcgataga
ttggataacaagctgaccacaccgaaagagaccaaggttcgcattcacacctcctccatc
ctgtaccaagcaccagaaaagaatgagtcacagtctctttcccaggcgaaggccgtgaag
cagctgccatctgattggctgatttacgaggaaatgacaagaatgtacacatcggtttcc
gtcaagtgctgtaccgctgttcaccccatcgcagtcgcgctttttgctggtccgagcttg
tcagctccaaacctagagcctggggaggacaagtcacgtgatacagaacgccggaacagt
gaaggacgatgggaaagcgaaagtagtgatagcgatgcagaagagagcaagcctggggac
aagtcacgtgacaaccaggcagagctgaaggttgacgattggataagcatgctgggaagt
gacgagacagtggagctagcgtcgttcctgcgccacaagctgcagatagtcttcatgcga
cgaatccgcgcaccgtcccgtccttggtctcaagtggacgagacggtggtgcgggcggtg
gtagctgtcctatcagcagaggaggagcgaatcaatcccgagctttatccgaaacagcgg
cgagcaaggccagagagttcatatgagtcccggtctagagttgaaagacagcgtccagga
gagaggtacagtcgagatcgcattggaagagatgttagagaatctggagcaagcccaagg
ccagactcgtcttcaaatcagcagggaatgccgcgtatggagacctcctctgctagatca
tcgcctgttcaggataagatatcagaagctcgatttttcatcatgaagtgtaataatcag
agaaacttggatatctcaatggccaagggcatctgggctaccacaatagccaatgaaaag
aagttaaacagagcttttaaggaaagcaagaaagttgtgctcatattctcagtacaagga
agcggtcactttcaaggtgtggcccatatgacttcaccgattgggcgagagaagtctccc
gaattcggatccagctctcttggaggcgtattcaccgttgaatggataacaaaggcgaac
attccattccagcaggcgcatcatctcgtcaacccttggaatgaccataagaaggttcag
atcagccgcgatggacaggagctagagccaagtattggtgctgagctgtgcaagttgtgg
gaagtcgaccatacaaacacttccaatagatactcacgtccggtcagcggagctaccaac
aacagcaggcgtggcaaactaccaccagaaggaaactctggaaaatggcaacatggaatt
gggcctgtgacacaacagccagcggtatatcctacagtttatgcgccacatgcagcctca
atgccgataccagtaccagtccctgcgcagcattcacggcaaactctgctccaggcttat
ccccggccagcaatgaccgcgccacagcctattcgttcccaacctctttatggagtgcac
ccgcacatgcgcaattcaaggtatcctggccacgtgatccctgcaccgatgcagccgcag
tccccacgaggggtaggctcacatgctttgcgaccaggctcgtatccgcagcagaagaga
taa
DBGET
integrated database retrieval system
