Nematostella vectensis (starlet sea anemone): 5514130
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Entry
5514130 CDS
T01037
Name
(RefSeq) collagen alpha-1(XI) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
nve
Nematostella vectensis (starlet sea anemone)
Pathway
nve04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
5514130
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nve00536
]
5514130
Glycosaminoglycan binding proteins [BR:
nve00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
5514130
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
5514130
NCBI-ProteinID:
XP_032239623
LinkDB
All DBs
Position
Unknown
AA seq
1122 aa
AA seq
DB search
MRGTRGRAGKRGPPGNDGPRGIPGTPGPKGDRGFDGIPGLPGHKGPRGLPGPRGDAGEKG
EPGARGEQGLAGEAGLPGERGAQGEPGPKGPPGPRGQQGASGARGPPGPTGAPGPMGAPG
VQGIQGMRGPPGPPGPQGSLGPAGAKGEPGKIGLPGFPGADGLPGYPGIEGPPGPKGDRG
PIGPRGPQGYQGAPGPKGNRGNRGTAGSKGDEGTGGFPGEKGDEGPRGEDGSAGRPGLPG
PEGQDGPKGRVGVAGAPGPPGPSGPKGERGLPGMAGYAGRAGDKGNQGPPGPRGRDGSKG
SRGEAGKQGPRGPRGRRGPRGERGSSGTPGVPGNKGQAGEPGLPGDRGPMGPPGPQGDRG
APGPQGMMGLTGRPGLPGFPGRRGETGPQGKPGPTGAQGMPGPRGPSGDPGPAGPKGDVG
RTGAPGETGVSGDPGKDGPKGDTGKPGLPGKDGKPGAPGNPGPKGVMGPPGPPGPKGVEG
PAGAIGQTGPMGPRGAAGLPGPQGANGIPGRAGDAGKPGEKGSRGEEGPRGEPGPAGKPG
EPGKAGPDGPQGPPGEDGDKGAQGMPGQPGKKGDRGPKGPPGPAGPIGNPGKPGPAGPPG
EQGPQGPMGPRGEKGPDGNRGPPGPSGQPGVPGVPGPRGEKGDRGAPGPAGPTGPQGPRG
LPGPAGPKGEQGQNGEAGTPGQQGEKGDRGPKGDLGAAGVAGTPGRPGEPGQKGARGDPG
PQGPPGLRGLPGGRGAAGAPGDVGPQGVQGPPGARGPTGPKGEKGSQGTQGEKGDKGWPG
FIGPTGPAGPQGEKGDIGPTGPRGHPGLKGNKGEDGPVGPSGPPGPMGPRGRAGNTGNKG
DRGQQGEQGDTGPMGPPGPPGPPGDVAGMLQGYLRPALSRDKGDTRRKRSLPEEHGDEMG
DHVLNIEKLRTQIEEIRRPDGSVSNPARTCKDLKMCKRANKDGRYWIDPNHGCSEDAIEV
FCNFTSGGETCIHPDKRTRTGERKHWSKVKGAEWFSEYKNGYEISYKSVGKTQLNFLRLL
SERAVQNFTYYCSGSIAWYDKLTKSYGRAIRLQGDNDEIFGYERNRFNIKVLHDGCQNKQ
DGKAVFQVETEDLNQMPIVDFSPGEMEESSEFGFEVGPICFS
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgcgaggcacccgtggcagggcgggaaaacggggaccacctggcaacgacggaccacgt
ggtattccaggaacacccggaccaaagggagatcgcggtttcgatggaatccccggacta
cctggccacaaaggaccacggggtctgcccggacctcgcggtgatgcaggagagaaggga
gagcctggggcgagaggcgagcaagggctggcgggagaggccggtcttcctggagagagg
ggagcccaaggcgaacctggacctaaaggacctccaggaccccgcggacaacagggtgct
tcaggcgcgagaggaccacccggacccactggagctcctggaccgatgggagctcctggt
gtacaaggcatccaaggaatgagaggaccacctggcccgcccggtccgcaaggtagcctg
ggacctgccggtgctaagggtgagcctggcaagatcggtcttcctggattccctggcgcg
gatgggcttccaggctatcccggtatcgaaggacctcctggacccaaaggagacaggggc
ccaattggaccgcgcggaccacagggataccaaggtgctcctggtccaaagggaaataga
gggaatcgtggtactgctggttccaagggagatgagggaactgggggcttccctggcgag
aaaggggacgaagggccaaggggagaggacggctctgctggacgacctggccttccggga
cccgaggggcaagacggccctaaggggcgtgtgggcgtggctggtgctccaggtccccca
ggaccttcgggtcctaagggagagcgaggcttgccgggaatggctgggtatgcgggacgt
gctggtgataagggcaaccaaggcccacctggtccacgaggccgcgacggcagcaaagga
tcacggggagaggccggcaagcaaggcccaagaggaccacgcggacgaaggggtccacgt
ggcgagagaggatcgtccggtactcctggcgtccctggaaataagggtcaagccggtgag
cctggacttcctggtgaccgcggcccaatgggtcccccaggcccccagggagatcgtgga
gcacctggcccgcaaggaatgatgggtttgacgggacgcccaggtctgccgggattccct
ggtcgacgcggggagaccggtccccaaggaaagccaggaccaacaggcgcgcaaggaatg
ccgggacctcggggaccatccggagatccaggtcctgcgggacccaagggagacgttgga
agaacgggagcaccaggagagactggcgtgtcaggggaccccggcaaggacgggcccaag
ggagatactggaaaacctggtctccccggaaaagacggaaagcccggagcccctggaaac
ccggggccgaaaggcgttatgggaccaccgggacctcctggtccaaaaggggttgaaggt
cccgccggagcgattggccaaacaggccctatgggaccacgtggtgccgccggtcttcct
gggccacagggagctaatggcattccaggccgcgcaggcgacgcaggaaaacctggagag
aaaggtagcaggggcgaggagggcccgcgtggtgagcctggtccagcaggcaagcctgga
gagccgggaaaagccggaccggacggcccacaaggaccgcctggagaggacggagataag
ggagcgcaaggtatgccgggccagcctggaaagaaaggagacagaggaccaaagggacca
cccggaccagctggacccataggcaaccccggcaagcctggaccagcgggaccacctggt
gaacaaggtccccaaggccccatgggaccccgtggtgaaaaaggccctgacggcaatcgc
ggaccccctggtccctctggacagcctggcgttccgggcgtgccgggaccacgaggagag
aaaggtgaccgcggtgctcctggtccagcgggcccaaccggacctcaaggcccgcgtgga
ttaccaggccccgcaggaccaaagggtgagcaaggccagaatggcgaagcaggaacgccc
ggacaacagggcgagaagggagaccgtggaccgaaaggtgatcttggagctgctggtgtc
gctgggacccctggacgaccgggagagcctgggcaaaagggcgcccgcggagacccagga
ccacagggtcctcctggactccgtggtcttcctggcggtcgcggtgctgctggtgcccct
ggtgatgttggaccacaaggagtgcagggaccaccgggagcacgaggaccaaccggacca
aaaggagagaagggtagtcaggggacgcagggcgagaagggagacaagggttggccagga
tttatcggccccaccggacccgccggtcctcagggagagaaaggcgacatcggacctact
ggaccacgtggacatccgggtcttaaagggaataagggcgaggatgggccggtcggaccg
tctggacctcctgggccgatgggacctaggggccgcgcaggaaacaccggaaacaaagga
gacagaggccagcagggcgagcagggagatacaggcccaatgggaccacctgggccaccg
ggaccacctggtgatgttgctggtatgctgcaaggctacttgcgccctgccttgtcacgt
gataagggagatactaggagaaagcgatcattaccggaagagcatggtgacgagatgggt
gatcacgtgctcaacattgaaaagctccgcactcagatcgaagagatcagacgccctgat
ggatccgtgtccaatccggcccgaacatgtaaagatctgaaaatgtgcaaacgagcaaac
aaagacggtcgttattggatcgatcccaaccacggatgctccgaagacgccattgaggtg
ttctgtaacttcacatctggaggcgaaacctgtattcacccagacaaaaggacaagaacg
ggcgagcgcaagcactggtcgaaagtcaagggggcggagtggttcagcgaatacaagaat
ggatatgaaatatcgtacaagtccgtcggtaaaacacaactgaacttcctaagactgttg
agtgagcgagccgtacagaacttcacttactactgcagcggttctatcgcttggtatgac
aagctaaccaagtcgtacgggcgagccattcgcctgcagggagacaacgacgaaatattc
ggctacgagcgcaacagattcaacatcaaagttcttcacgacggctgccagaataaacaa
gacggtaaagctgtattccaagtcgagacggaagacctcaaccaaatgcctattgtggac
ttttcacccggagaaatggaggaatcctcggagttcggtttcgaagtcggacccatctgc
tttagttag
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