Nematostella vectensis (starlet sea anemone): 5514203
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Entry
5514203 CDS
T01037
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
nve
Nematostella vectensis (starlet sea anemone)
Pathway
nve03008
Ribosome biogenesis in eukaryotes
nve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
5514203
09123 Folding, sorting and degradation
03018 RNA degradation
5514203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nve03019
]
5514203
03009 Ribosome biogenesis [BR:
nve03009
]
5514203
03016 Transfer RNA biogenesis [BR:
nve03016
]
5514203
03036 Chromosome and associated proteins [BR:
nve03036
]
5514203
Messenger RNA biogenesis [BR:
nve03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
5514203
mRNA degradation factors
5'-3' decay
5' exonucleases
5514203
Ribosome biogenesis [BR:
nve03009
]
Eukaryotic type
Pre-60S particles
RNases
5514203
Transfer RNA biogenesis [BR:
nve03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
5514203
Chromosome and associated proteins [BR:
nve03036
]
Eukaryotic type
Gene silencing
piRNA pathway
5514203
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
dsrm
MSSS
Motif
Other DBs
NCBI-GeneID:
5514203
NCBI-ProteinID:
XP_032239666
LinkDB
All DBs
Position
Unknown
AA seq
1774 aa
AA seq
DB search
MGVPKFYRWVSERYPCLSQVVQEHQIPEFDNMYLDMNGIIHPCSHPNDDDPHFRITEEQI
FTNIFHYIEVLFQIIKPKKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDNIRKALAKGQ
VLPKEERFDSNCITPGTLFMARLQEQLQYFVNDKISNDPAWQGLRIYLSGQQTPGEGEHK
IMEFIRTERTRPDYDANTRHCLYGLDADLMMLGLTSHEPHFSLLREEVRFGKTSKRIEKP
EQITFHLLHLSLFREYLDWEFHPLKDSLPFEYDLERIIDDWILMGFLVGNDFIPHLPYMH
INHDALPMLYQIYKEIMPSLDGYLHDGGTLCLPRFEKYLKELSKFDREKFNESFVDMKWF
EAKVKHKFGEKKGARHSQLNPKVRQGNDSSDNPFSALDSLAVEFEEFKTDDDPEISPELA
KLAAKMDDGDGDSEEVDEFEIEFAMHKKSYYSDKFGLEHVDSDVVSKITLEYVRGIQWIL
HYYFNGVQSWSWYYPFHYAPFLSDIKDFSHYELKFDMSKPFLPFEQLLGVLPAASKQLLP
APFQNLMIMEQSPIIDYYPLNFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMKPLYRQLTK
EEKTRNTHGPCHLYTYDKTLADHYPSTLPGVFPDISRCHARCEKFDREQLVSSLENLVKG
LLKDVKLEVYFPGFPTLYHIPHTAELKKASVKVFQMHSRSDSMILKLQQSQLEPTIRVAE
KYLGETCYVGWPHMVEALVVAVSDNTFRYSRKKGEKDIQQDILSEEDGWEKQVKSFAQSQ
MERRGIDVGAVEILIDACPVIGRRFLCSAKGQVTLEKEWSPVPKQYAFQTVVKDISVHES
VSTDSMRTIDELFPVDCVCFMLAMPHYGASGTVLEVDVKQGRVRVQLRVPEEPNIASIAK
QREDLSVGYLPSHVVAQKMGISSSLLGKITAKFFIEQGSREKSKGQGNKKIDIGLNLKLT
KQNKELLGYTRRTQNGWMFTQAARNVITQYINKFPKLFDALATLQQSDQVYEADMLDHGI
DLSVLTDVQNWLKSLPLQKQTVVTCGSDALDDPVLEAIEEAVKKVKTSLPPKIVKVRVRP
YLLFRPSDFLGNTLPDSDTEIQLFDRVVNVKLNSAVPFGLRGTVVGFHIGEDDDELVEVL
FDEHFIGAQSIRRTTNGVYLAHPSSLIDLTFGERQEMRKRGETAIPPRPLKQSFATALAG
ENGRRGAGSNRSPHRGRERQDGSPRPSGHDKHGVGPDSKRDSPAPEGICIMSKKTQNGRI
ADRPEKQATEQSASRDSPGRPAQQNNTKRDTPGKEDTRNAKQEVPPRFAKSADNSNEFAN
MWQELKSKENSPPEKTNVSTNQESACAQPQSVESEHPETPSDAAKESSQALCDLLQIGRK
QDSKEAAKPPDSTPGEDAAQKEPAMRAVSLDELFGSQKTGVKAAPKPAPGNESSVLPAQA
LLQWCHSIGLPPPAFYYIQTDKGLSATVELANGFKCQGTPCKDRMEATQSAAAQALSQMR
RMMSQFVPHQQLPFPQRAGVFFPPSGQMPFMQIMPHHAFPTYPVHPMARRPQLGHPLHPQ
HHQFPRMPPLHAPSMRPAGHKVMHADHVTKTPDKDARRTVPSSPATSPFVPLQVTRRNVA
PKSAPSPTNTLSETSREAESTPQKTIHEMLQEASARSVQPETQQAKPSASATVSKPVFEI
ERERQVSSESNRVNSSKDLADKRENVAECKEGLAGNRKDPADNNEGLADKCSKPSTSQND
SEAGSPSQSKPARRQQSAGRSKPLMAPSFFQKKT
NT seq
5325 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcccaaagttctatcgatgggtgagcgaacgatatccatgccttagtcaagtc
gtacaagaacaccagatccccgaattcgataacatgtatttggacatgaatggcataatc
catccctgttctcatccgaatgatgatgatccacacttcaggattaccgaggagcaaatt
ttcaccaacatatttcattacatagaggttttgtttcaaattatcaaacccaagaaggtt
ttcttcatggctgttgatggagttgcaccaagggctaagatgaaccagcagcgaggaaga
cgcttcaggtcagccaaagaggcggaagacaatattcgaaaggcattggctaaagggcaa
gtgctcccaaaggaggaaagatttgattcaaactgcattacaccaggaaccttatttatg
gctcggctacaagagcagcttcagtattttgtgaatgacaagatttctaatgatcctgct
tggcaaggactaagaatatacctctcagggcaacagactcctggtgagggagaacacaaa
atcatggagttcatccgtacagagaggacgcggccagactatgacgctaatactaggcat
tgcttgtacgggcttgatgcagacttgatgatgttaggtcttacttcacatgaacctcac
ttctcacttctaagagaagaagtgaggtttgggaaaacatcgaaaagaatagagaaacct
gaacagataactttccatctgcttcacctgtcactatttagagagtatctggactgggaa
ttccacccattgaaggactcacttccatttgagtatgaccttgagcgtatcattgatgac
tggatcctgatgggttttctagttggtaatgactttatccctcatctaccctacatgcac
atcaaccatgatgctttgccaatgctgtatcagatctacaaggagatcatgccgtctctt
gacggttatcttcatgatggaggaactttgtgtctcccaagatttgagaaatacctcaaa
gagctgtcaaagtttgacagggagaaatttaatgaatcatttgtggacatgaaatggttt
gaagctaaagtaaagcataaatttggggagaagaaaggtgcaaggcattctcagcttaac
cccaaggtaagacaagggaatgactcatctgataaccccttttcagccttagattccctg
gcagtggaatttgaagagttcaaaacagatgatgaccctgagataagccctgaactagct
aaactagctgccaaaatggatgatggtgatggtgacagtgaagaagttgatgagtttgaa
attgagtttgctatgcacaagaagagctactattcagacaagtttgggcttgaacatgtt
gacagtgatgttgtatccaagataaccttggagtacgtccgtgggatccagtggatcctt
cactactacttcaatggagtccaatcatggagctggtattacccatttcactacgctcca
ttcttgtctgatataaaggacttctctcactatgagctcaagtttgacatgagtaaacca
ttccttccatttgagcaactattaggtgtgttacctgcggctagcaagcagctccttcca
gctccattccagaacctgatgattatggagcagtcccccatcattgactactacccactc
aacttcaagacagatctgaacggcaagcagcaagagtgggaggctgttgtgttgatccca
ttcattgacgagaaacgtcttctagaagccatgaagcctctgtatcgtcagctgaccaag
gaggagaagacaagaaacacacatggcccctgtcatctgtacacttacgacaagacactg
gcagaccattatccttcaacccttcctggcgtgttcccagatatatcacgatgccatgct
aggtgtgagaaatttgacagagagcagcttgtttcatcactagaaaacctagttaaaggt
cttcttaaggacgttaaacttgaagtgtacttcccaggattccctacactttatcacatt
cctcacactgcagaactaaagaaggccagtgttaaggtgtttcagatgcatagtcgctct
gatagtatgattctaaaacttcaacaatcacagctagagcctactatacgagttgcggag
aagtacctaggagaaacttgttatgttggctggccacacatggtggaagcactggtggtg
gcagtgtcagataataccttcagatacagccgtaaaaaaggagaaaaagatatccaacaa
gatatactatctgaggaagacggttgggaaaaacaagtcaagtcatttgctcaaagtcaa
atggagaggcgtggcattgacgtcggagcagttgagattcttatcgatgcttgtccggtt
ataggacgtaggtttctgtgcagtgcgaaaggccaggttactcttgagaaagaatggtcc
ccagtccccaagcagtatgcgtttcaaactgttgtcaaggacataagcgtgcacgagtct
gtgagtacagatagcatgcggaccatagacgagctgtttccggtagactgtgtgtgcttc
atgctcgcgatgcctcattatggggcatctggtacggtgctggaggttgacgtcaagcag
ggaagggtgagagtgcagctccgtgtaccagaggaaccgaacattgcctccattgccaaa
cagcgcgaggatctttccgtcgggtatcttccatcacacgttgtggctcaaaagatggga
atatcatcttcgctgcttggcaaaatcacggccaagttttttatcgagcaaggctctaga
gaaaagagcaaaggtcaggggaacaaaaaaatcgacatcgggttgaacttaaagttaact
aagcaaaacaaagagttgttggggtacacgcgcaggacgcagaatggctggatgttcact
caggcagctcggaatgttattactcagtacatcaacaaatttcccaaactgtttgacgca
ctggctaccttacagcagagcgaccaggtctatgaagccgacatgctggaccatggcatt
gacttatccgtactgacggatgtgcagaactggctaaaaagtctaccgctgcaaaagcag
accgtggtcacgtgtggtagtgacgcactggacgatcccgtcctggaggcgatagaggag
gccgttaagaaggtcaagacttctcttcctcccaagatagtcaaagtccgcgtccgccca
tatcttctattcaggccctcagatttcttgggaaacactcttccagatagtgataccgag
atccaattgtttgatcgagtcgtcaacgtcaagctgaactcagcggttccatttgggcta
cggggaactgttgttggcttccacataggtgaagatgatgatgaactggttgaagtctta
ttcgacgaacatttcattggcgctcagtcaatcaggcgaaccacgaatggagtgtacctg
gcgcacccatccagccttatagatcttacatttggcgagaggcaagagatgcggaagaga
ggggagactgctatcccgccgcgacccctcaaacaatccttcgccactgctctagctggg
gaaaatgggcgcagaggggcgggttcaaatagaagtccgcacagggggagagaacgccaa
gatggttctcctcgtccaagtggacacgacaaacatggtgttggcccggacagcaaacgc
gattccccggccccagaaggaatttgcattatgtccaagaaaacacagaacggccgtatc
gcagacaggcccgagaagcaggctacggagcaaagcgctagccgagacagtcctggacga
ccagcccaacagaacaatacaaagcgtgacacaccagggaaggaggatacaaggaatgca
aagcaagaagtacctccaagatttgctaagagtgccgacaattccaatgaatttgccaat
atgtggcaggaactcaaatccaaagaaaacagccctcctgaaaagaccaacgtctcgacc
aatcaggagagcgcttgtgcgcaaccacagagcgtagagtcagagcaccctgagaccccc
tctgatgcagcaaaggaaagctctcaagccctatgtgatctactgcaaattggccgtaaa
caagacagcaaggaagcggccaagccgccggacagtaccccaggggaggatgccgcacag
aaggagccagctatgcgtgccgtgtcccttgacgagctcttcggctcacaaaaaaccggg
gtaaaagcagcgcctaagcctgcacctggaaatgaaagcagtgttttgcctgcgcaagcc
cttctgcagtggtgccattctatcggtcttcctcctcctgcgttttattacattcaaact
gataagggtttatcagctacagtagaactcgcaaatgggtttaaatgtcaaggtaccccc
tgcaaggaccgcatggaggctacacagagtgcagctgctcaagcactttcacagatgcgc
cggatgatgtcccaatttgtaccacatcaacagcttccatttccccaacgggcgggtgtg
tttttcccaccctctggacaaatgccctttatgcaaatcatgcctcatcacgcattcccc
acctaccccgtgcaccccatggcaaggcgtccacagcttgggcaccctctacatccacag
catcaccagttccctcgaatgcctcccctgcacgcgccgtccatgaggccagcgggacac
aaagtgatgcatgctgatcacgtgacaaagacccctgacaaggatgcgagaagaaccgtc
ccttctagtccggctactagcccttttgtcccacttcaagtcacaagaagaaatgtagct
cccaaaagcgcgccctcgccaacaaatactctaagtgagacctcccgagaggcggagtct
acgccgcaaaagactattcatgaaatgctgcaagaagcgagcgcacgctcagtgcaaccg
gaaacgcagcaggcgaaaccttcagcaagtgctaccgtctccaaacctgtcttcgagatt
gaaagggagcgacaggtctctagtgaatcaaaccgtgtaaatagtagcaaagatctggcg
gataagagggaaaatgtagcggaatgtaaggaaggtctggcgggtaataggaaagatcca
gcggataataatgaaggtctagcggataaatgctctaagccgtcgacatctcaaaatgac
tctgaggcaggcagcccaagccagtctaagcctgcacgaaggcaacagagcgcgggtcgc
agcaagcctctgatggcgccaagtttcttccagaagaaaacttaa
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integrated database retrieval system
