Nematostella vectensis (starlet sea anemone): 5514802
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Entry
5514802 CDS
T01037
Name
(RefSeq) collagen alpha chain isoform X1
KO
K19720
collagen type III alpha
Organism
nve
Nematostella vectensis (starlet sea anemone)
Pathway
nve04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
5514802
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nve00536
]
5514802
Glycosaminoglycan binding proteins [BR:
nve00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
5514802
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
WAP
Motif
Other DBs
NCBI-GeneID:
5514802
NCBI-ProteinID:
XP_032240366
LinkDB
All DBs
Position
Unknown
AA seq
1429 aa
AA seq
DB search
MASLTWILLVGLLFIAVEAQAQCPIRKPPECPNMVKNECVVDSDCLTQGTICCYNGCVYQ
CIKPAPTYPPVKGQRGPDGPPGDIGDQGPSGEAGKPGPLGYNGQPGNQGMRGDPGPQGDQ
GPQGPPGGSTQAAGGIKGPDPNDLAAGIKGSNGAPGPRGSPGLPGPRGSDGPRGQRGEVG
LPGESGSAGRRGASGPPGSPGIDGFSGAPGEQGEKGEAGPSGPPGPIGAPGMPGDVGFKG
DRGFPGLKGQKGEEGNLGERGMVGRPGRPGFDGAPGAPGSPGAEGKVGLTGQTGPRGPTG
PPGLQGVRGAPGNEGARGLPGNPGLKGKRGATGSRGSPGNQGPQGPSGPQGSKGQAGIDG
RPGEPGLPGDKGAMGGPGPAGQPGIRGPSGAPGITGNPGATGINGDRGAPGRPGKIGSKG
EKGSEGPNGSPGPRGAPGPPGKRGKIGRVGPMGPIGDPGSRGATGPRGFPGAAGPNGRKG
EQGSPGAAGFPGSKGDKGSSGKNGEPGRVGLRGPPGQPGSPGREGKTGLPGDDGQDGKPG
APGKPGMTGMPGPSGVAGAKGANGEPGKDGDTGPQGPAGAKGESGLAGSRGMPGVAGKNG
NAGEPGERGPVGPQGPQGAPGTQGPPGLPGKTGESGPRGERGTDGKPGAMGERGPQGETG
PTGLTGPTGKPGDRGSNGADGTPGEPGAQGPSGNPGTPGRQGMPGASGRRGAPGAKGSRG
ERGRVGPPGIDGKDGAPGSDGLNGPPGPQGPAGEKGEAGQPGTNGFNGKNGDQGPRGLPG
TPGAPGRNGEQGASGPTGPVGPRGPGGIKGAKGVMGSSGRPGITGTLGQRGRLGSKGGEG
TPGSQGMPGMSGPPGRPGPPGPPGPPGPSGPSGSNGRNGVKGSTGEGGRPGRDGEPGEPG
TPGRDGEPGIPGPDGRPGERGPGGEIGRKGEKGPSGPPGITGNRGPPGSPGIKGERGYPG
KDGRAGEPGAVGLRGPTGQPGENGLPGEPGKPGINGTNGRGGIPGLKGERGSPGEPGKAG
KQGPPGPSGPLGANGEPGVQGAKGARGDDGKDGKQGPAGPQGPNGPQGDKGNRGPRGEKG
DKGFTGSDGSPGAPGQQGEQGPPGVAGTDGPPGPRGGPGSRGPQGPPGGLGLPGNVGPMG
PMGDPGARGEKGTAGRDGLPGPPGPPGPPGYTGLSPVGGYLSVGTVEKGPGYRLYAGSKD
AKKPDNPSVSFMTALEKMEIDVNTIRKPTGMKNNPAKTCKDLRMDHPDYVSGYYWIDPNE
GSKKDAIRVYCDFSNDFSCISPTKAKLLNLRVQANVNKKDKWLSEAFEEESQIDYSAEQS
QIAFLRVFSKRAYQNVTYNCQNYKAWTNRKHSIKLRGDNDLIFHAKSPKKFQPTVILNEC
TTKDDQWHKTILAIDTKQKHRLPIVDMALFDFGKPHQKVTVEVGSVCFA
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atggcttctcttacttggattttgctcgttgggcttttatttattgccgtagaggcacaa
gcccaatgtccaataagaaagcctccggagtgtccaaatatggtgaagaacgaatgtgtg
gtggacagtgactgcttgacgcaggggacgatatgctgctacaatggctgcgtttaccaa
tgcattaaacctgctcccacatacccacccgttaaaggacaaaggggtcctgatggccct
cctggagacattggtgaccaagggccctcgggagaagcaggcaagccgggtccattggga
tacaatggacaacccggaaatcaaggaatgaggggagaccctggaccacagggagaccaa
ggaccacaaggaccccctggaggatccacgcaggctgccggtggtatcaaaggacctgat
ccaaacgacttggccgctggcatcaaaggatccaatggtgctccaggtcccagaggaagt
ccaggtcttcctggacctcgtggttctgatgggcccagaggtcagcgtggagaggtcggt
cttcccggtgaatctggatcagcgggacgaagaggagcatccggaccaccaggaagtcct
ggaatcgacggattttctggtgctcccggtgagcaaggagagaagggagaagctggaccc
tcaggacccccaggacccattggcgcccctggtatgccgggagatgtcggattcaaggga
gacaggggctttccaggcttgaagggacagaagggcgaagaaggaaacttgggagagcgg
ggtatggtaggacgaccgggacgaccaggctttgatggagctcctggtgcccctggatct
cccggcgctgaaggaaaggtcggtcttaccggccagacaggaccaagaggacctactgga
ccaccaggactgcaaggagttcggggagctccaggtaacgaaggtgcacggggattgccg
ggtaacccgggtttgaagggtaagcgtggtgctacaggatcacgtggttctcccggtaac
caaggacctcaggggccttctggaccacagggctcaaagggccaggcaggcatcgacgga
aggccaggagaaccgggtcttcctggagacaaaggagcaatgggcggacctggacctgct
ggacaacctggtatccgtggaccaagtggagccccgggtatcactggaaaccctggtgca
actggtatcaacggcgacaggggtgctcctggacggcctggaaagattggtagcaaggga
gagaaaggttcagagggaccgaatggttcgccaggccctcgtggagctcctggtcctcca
ggaaaacggggtaaaatcggccgtgtcggaccaatgggtcccattggagatccaggatcc
aggggagctactggtcctcgtggattccccggagcagctggaccaaatggacgcaagggt
gagcaaggttcgcccggtgccgcggggttccctggaagcaagggagacaagggatcgtca
ggaaagaacggagagcctggaagagttggccttaggggaccccccggccaacctggatcc
cctggacgagaaggaaagactggacttcctggagatgatggtcaagacggaaagcctgga
gcgcctggaaagcctggtatgaccggtatgcctgggccttcaggtgtagctggtgccaag
ggagcaaacggagagcctggaaaagatggagacactggaccccagggaccagcaggcgcc
aagggtgagtcaggcttggccggatcacgtggtatgcctggtgttgctggaaagaacgga
aatgccggagagccaggagagagagggcccgttggtccccagggaccccagggagcgcca
ggaactcagggaccacctggtcttcctggaaagactggagagtctggaccacgcggagag
aggggaaccgacggcaaaccaggtgcaatgggtgagcgcggaccacagggagaaaccgga
ccaactggattaacgggacctactggcaaacctggagacaggggatccaatggcgccgac
ggtaccccgggagagcctggtgcacagggaccaagcggaaaccctggtaccccaggtcga
cagggaatgcctggagcaagtggacgacgtggagctcccggagctaaaggatcgagggga
gagcgaggaagagttggacctccaggaatcgacggcaaagatggagcacccggttccgat
ggtctcaatgggcctcctggaccacaaggacctgctggagagaagggagaggcaggccaa
ccaggaacaaacggattcaatggaaagaacggagaccagggaccacgcggtcttcctggt
acccctggagctcctggacgcaacggagagcagggtgcgtctgggcctacagggcctgtt
ggacctcgaggacctggcggaattaagggagcgaagggtgttatgggatccagtggccgt
cctggaatcacaggaactctcggccagcgtggacgacttggttctaaaggtggtgaggga
acacctggaagtcaaggtatgcccggtatgagtggaccacctgggcgccctggaccacca
ggaccacctggtccccccggtccctctggtccatctggatctaacggtcgcaacggagtc
aagggttcaacaggagagggcggtcgaccaggtcgcgatggggagccaggcgaaccagga
actcccggacgtgacggtgaacctggcatccctggacccgacggaagacctggcgaacgc
ggacctgggggagagattggaaggaagggagagaaggggccatccggacctcctggtatc
accggcaacagggggccacccggaagccctggaatcaagggcgagagaggctatcccggc
aaggacggcagagctggcgaaccaggagctgtgggcctccgcggtccaaccggtcagcct
ggtgaaaacggtctacccggagaaccgggcaagccaggcattaacggtaccaacggccga
gggggaattcctggactcaagggagaacgtggatctccaggtgagccaggcaaagctggc
aagcagggacctcctggaccatccggccctctcggagcgaatggagaaccaggtgttcag
ggagcgaagggtgcccgtggtgatgacgggaaagacggcaagcaaggaccagctggacct
cagggacctaacggaccacaaggtgacaagggcaatcgtggtcctcgtggagagaaggga
gacaagggattcacggggtcggacggatccccgggagctcccggacaacagggagaacaa
ggtccacctggagtcgcaggcaccgatggcccccccggaccacggggcggacccggatca
cgaggtcctcagggaccccccggcggactcggcttaccgggaaatgttggaccaatggga
cccatgggagatccgggagcccgcggagagaagggaacagctggaagagatggtcttcct
ggacccccaggaccacctggtcctcctggttacactggtctttcacctgtcggtggttat
ctgagcgtcggaaccgtagagaaaggcccaggatatcgtctctacgctggctctaaggat
gccaaaaagcccgacaacccatctgtgagctttatgactgcccttgagaagatggaaata
gatgtgaacaccatccgtaagccgactggaatgaaaaacaaccccgccaagacatgcaaa
gatttgcgcatggatcaccctgactacgtcagcgggtattactggattgaccctaatgag
ggcagcaaaaaagatgctatcagagtctactgtgacttctccaacgacttctcttgcata
tctcctacaaaggccaagcttcttaaccttagagtccaagcaaacgtcaacaaaaaagat
aaatggctgagtgaagcattcgaagaagagtctcagatcgactactccgccgagcagagc
cagattgcattccttcgcgtattcagcaagcgtgcctatcagaacgtcacgtacaattgc
cagaactacaaagcctggaccaataggaagcactccatcaagcttcgaggggacaacgac
ctaatcttccacgccaagagcccaaagaagttccaacccacggttattcttaacgaatgc
acgacaaaggatgatcaatggcacaagaccatcttggcaatcgacaccaaacagaagcat
agactgcccatagttgacatggccttgtttgatttcggcaaaccacatcaaaaggtcacg
gtagaagttggctccgtttgcttcgcatga
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