Nematostella vectensis (starlet sea anemone): 5515330
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Entry
5515330 CDS
T01037
Name
(RefSeq) spliceosome RNA helicase Ddx39b
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
nve
Nematostella vectensis (starlet sea anemone)
Pathway
nve03013
Nucleocytoplasmic transport
nve03015
mRNA surveillance pathway
nve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
5515330
09122 Translation
03013 Nucleocytoplasmic transport
5515330
03015 mRNA surveillance pathway
5515330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nve03019
]
5515330
03041 Spliceosome [BR:
nve03041
]
5515330
Enzymes [BR:
nve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
5515330
Messenger RNA biogenesis [BR:
nve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
5515330
Spliceosome [BR:
nve03041
]
Complex C
Other components
EJC/TREX
5515330
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
5515330
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
P-loop_SecA
ApbA
Motif
Other DBs
NCBI-GeneID:
5515330
NCBI-ProteinID:
XP_001635457
UniProt:
A7RYW1
LinkDB
All DBs
Position
Unknown
AA seq
429 aa
AA seq
DB search
MAEDGDVENELLDYEEEENEAPAEGAQAIKDQAKKDVKGTYVSIHSSGFRDFLLKPELLR
AIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATLQQLEPVDGQVSVLV
MCHTRELAFQIHKEYERFCKYMSNIKIAVFFGGINIKKDQQTLKTNCPHIVVGTPGRILA
LTREKTLNLKHAKHFILDECDKMLEQLDMRRDVQEVFRMTPHEKQVMMFSATLPKEIRSV
CKKFMQDPMEVYVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDLLEFNQVIIFVKSVQ
RCTALSHLLLKQNFPAICIHRGMKQEERLARYQQFKNFEKRMLVATNLFGRGMDIERVNI
VFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEADAKTLNEVQDRFEVNVGELPDEI
DMSYVEQAR
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagacggtgatgttgaaaacgaattgttggattacgaagaagaggaaaatgaa
gcaccagcagagggagcccaggccatcaaagatcaggctaagaaagatgtcaaaggaacc
tatgtgagcattcacagttctggtttccgagattttcttctcaagcctgaacttctgcga
gccatcgtcgactgtggatttgaacatccatcggaagtccaacacgaatgcatcccccag
gccatcttaggtatggatattatctgtcaagcaaagagtggtatgggcaagaccgctgtg
tttgtccttgcaacactacaacaacttgaaccagtggatggccaggttagcgtactggtt
atgtgccatacgcgtgagctggcgttccagattcacaaggagtatgagcggttttgtaag
tacatgagtaatatcaagattgcagtgttctttggaggcatcaacatcaagaaagaccaa
cagaccctcaagaccaactgcccccacatcgtcgttggcactcctggtcgcatactggcc
ttgacgagagagaagacgctgaatctcaagcacgccaagcactttatccttgacgaatgc
gacaagatgcttgaacagcttgacatgcgtcgagatgttcaagaagtattccgcatgacg
ccccatgagaaacaagtgatgatgttcagtgccacacttcccaaggagatccgctcagtc
tgcaaaaagtttatgcaagatcctatggaggtgtatgttgacgacgagaccaagctcaca
cttcacggtctgcagcagtactatgtcaaactgaaagataacgaaaagaacaggaaacta
tttgacctgctagatttgctggaatttaaccaggttatcatcttcgtcaagtctgttcaa
agatgtacagccttgtcccatcttctcctcaaacagaatttccctgccatctgcatccat
cgcggcatgaaacaggaagagagattagcaaggtatcagcaattcaagaatttcgaaaag
aggatgcttgttgccaccaacctatttggacgtggcatggatatagagcgagttaacatc
gtctttaactatgacatgcctgaggactctgacacctacctccacagggtggccagagcc
ggacgatttggtaccaagggacttgccatcacatttgtatctgatgaagcagatgccaag
acactaaacgaggtgcaagacagatttgaagtcaacgttggtgaacttccggacgagata
gacatgtcatatgttgaacaagcacgctaa
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integrated database retrieval system
