Nematostella vectensis (starlet sea anemone): 5515925
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Entry
5515925 CDS
T01037
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nve
Nematostella vectensis (starlet sea anemone)
Pathway
nve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
5515925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nve03019
]
5515925
03041 Spliceosome [BR:
nve03041
]
5515925
03009 Ribosome biogenesis [BR:
nve03009
]
5515925
03016 Transfer RNA biogenesis [BR:
nve03016
]
5515925
Enzymes [BR:
nve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
5515925
Messenger RNA biogenesis [BR:
nve03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
5515925
Spliceosome [BR:
nve03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
5515925
Complex C
U4/U6.U5 tri-SnRNP related factors
5515925
Ribosome biogenesis [BR:
nve03009
]
Eukaryotic type
Pre-60S particles
Helicases
5515925
Transfer RNA biogenesis [BR:
nve03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
5515925
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AAA_22
ATPase_2
DBC1
Motif
Other DBs
NCBI-GeneID:
5515925
NCBI-ProteinID:
XP_032241598
LinkDB
All DBs
Position
Unknown
AA seq
1029 aa
AA seq
DB search
MADAFDEEDLFAVFEQQSPATEKGKSTKKDGKGKTKATTSCITPKAGLKRDFDTEENEPT
WDPDDESAATKKQRVEDTIESLLESVPQVDVVTLDILEACTHEVAFPKGFEYTPLVQSAA
KPAKEYPFILDPFQKEALRCLENNKSVLISAHTSAGKTVVAEYAIAMSLQKKQRVIYTTP
IKALSNQKYRELYEEFQDVGLMTGDVTINPTASALVMTTEILRSMLYRGSEVMREVAWVV
FDEIHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWIVHLHKQPCHVVYTD
FRPTPLQHYIYPAGGDGLFLVVDEKGDFREENFQKAMGVIRVGGGDPGAQRGRKGGTKGP
SNTFKIVKMIMERNFQPVIIFSFSKKECEAYALQMSKLDFNTAQEKTLVEEVFNNAIDCL
SDEDKKLPQVEHVLPLLKRGIGIHHSGLLPILKETIEILFSEGLIKALFATETFALGLNM
PARTVVFSNARKFDGKDFRFITSGEYIQMSGRAGRRGLDERGIVILIIDEKMGPDVGKGL
LKGHADPLNSAFHLTYNMVLNLLRVEEINPEIMLEKSFYQFQNYAAIPAMIEKMKDLESK
RDQVEIPNEESITAYYKIRQQLKKLADDMLAFIHQPKYCLPFMQPGRLVRVQNNDEDFGW
GAVLNFQKKANQKGAVGDTLYVLEVLLKCSPKAIKSADGDIPKPCGPDEKGEMQVVPVLM
HLVKRISSVRLYIPKDLRSLDSRQSVGKSIQEVKKRFPDGLPLLDPIEDMGIKDDGLKKI
VRKIEMLEHRMYTHPLHKDPELDKLYSLCEKKAMVSNEIRAARKELKRARTILQLDELKC
RKRVLRRLGYATASDVIEVKGRVACELSSGDELLLTEMIFNGVFNELTTEQSVALLSCFI
CEERSDEMPKLREELAGPLRQMQESARRIAKVSQEAKMELDVEEYVEKFRPHIMDVVFAW
ANGSSFSQICKMTDIFEGSVIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIVKIKRD
IVFAASLYL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcatttgacgaagaggacttgtttgcggtgtttgaacagcagagcccagct
acagagaaagggaaatccactaagaaagatggcaaaggaaaaaccaaagccacaacatca
tgtattacccctaaggctggcttgaaacgtgattttgatacagaggaaaacgaaccaacc
tgggatcccgacgatgagtcggcagccacgaagaaacagagagtcgaggatacgatagaa
agtttattggaatccgttccccaagtggatgtggtgactttagatattttggaggcctgc
acacatgaggtggcctttcccaagggatttgaatacacccctctagtacagagtgctgcc
aagccggcaaaggaatatccattcatccttgatccattccaaaaggaagctttgaggtgt
cttgagaacaacaagtcagttcttatttctgctcacacttcagctggcaagactgttgta
gcagaatatgcgattgctatgtcattgcaaaagaagcaaagagttatctatactacccct
atcaaggctcttagtaaccagaaatacagagagctttatgaagagttccaggacgttggt
ctgatgacaggagatgtgacaattaaccccactgcaagtgctctggtcatgaccactgag
attcttagaagtatgctttacagagggtcagaggttatgcgggaggtggcatgggttgtg
tttgatgagatccattacatgagagacaaagagcggggagtagtctgggaagagaccatt
attctcctacctgataatgtccattatgttttcttgtctgctactatccctaatgcacgg
cagtttgccgagtggatagtgcacttacataaacagccctgtcatgtggtgtacactgat
ttccggcccacccccctacagcactacatttaccctgcaggcggggatggactcttcctg
gtggttgacgaaaagggtgactttagagaagagaacttccaaaaagcaatgggtgtgata
cgagttggaggtggtgaccctggcgctcaaagaggccgcaaaggaggcaccaaaggccca
tctaacacattcaagattgtgaagatgatcatggagagaaacttccagccagttattatc
ttcagttttagtaaaaaggaatgcgaggcatatgctcttcagatgtcaaaacttgacttc
aatacagcgcaagagaaaactctagttgaggaggtgttcaacaatgctatagactgcctg
tcagacgaagataagaagctcccacaggtggagcatgttcttcctctactcaagcgaggg
ataggtatccatcactctggattactgcccattctcaaggagacgattgagatactattc
tctgaaggacttatcaaggctctgtttgcaactgagacgtttgcccttggactgaacatg
cctgcaaggactgtggtattctccaatgccaggaaatttgatgggaaggactttagattt
attacttcaggagaatacattcagatgagtggtcgtgctggtaggcgtggtctggatgag
agagggattgtcattctcataattgatgaaaagatggggccagatgttggcaaaggttta
ttaaaggggcatgcagatcctctgaacagtgcttttcacttgacatacaacatggtccta
aacctgctaagagtagaggagattaatcctgagattatgttggaaaagtctttctaccaa
tttcagaactatgctgcaatccctgcaatgatagaaaaaatgaaggacctagagtccaag
cgagatcaagtggaaatcccaaatgaggagtccatcacagcgtactacaagatacggcaa
caactaaaaaagcttgcagacgacatgctagcattcattcaccagcccaagtactgcttg
cctttcatgcaaccaggccgactagtgagggttcaaaataatgatgaggattttggatgg
ggagctgttctgaatttccagaaaaaggcaaatcaaaagggtgctgtgggtgataccctg
tatgtgctggaggtgttgctgaaatgttctcccaaggctatcaagtcagctgatggtgat
atcccaaagccttgtgggccagatgaaaagggggagatgcaggtggtccctgtgttgatg
cacctggtaaaacgaataagcagtgttcgtctgtacatcccaaaggaccttcgctcactt
gacagtcgtcaaagtgttggcaaatccatccaggaggtgaagaagcgttttcctgatgga
ttaccacttcttgatccgattgaagacatgggcatcaaagatgacgggctaaagaagatc
gtcaggaaaatcgagatgctggaacatcgcatgtacacacatcctttgcacaaggaccca
gaactagacaagctgtactccttatgcgaaaagaaggccatggtgagcaatgagatccga
gcagccaggaaggagttgaagagggcgaggacaatattacagctggacgaactcaagtgc
aggaagagagtgcttcgaagactggggtatgctacggcgtcagacgtaatagaggtgaaa
ggccgagtagcctgcgagcttagcagcggggacgaattgcttttgaccgaaatgatcttt
aacggcgtgtttaacgagctgaccaccgagcaaagcgtcgctttactcagctgtttcatc
tgcgaggagaggagcgatgagatgccaaagttgagggaagagctcgctggtcctcttcgc
cagatgcaggagtccgctcgtcgcatcgctaaagtctcgcaggaagccaaaatggagctc
gacgtcgaggaatacgtagagaagttccgtccgcacatcatggacgtggtctttgcctgg
gcgaatgggtcatcattctcacagatctgcaagatgacggatatattcgaagggagtgtg
atccgctgcatgcgtcgactagaggaattactcagacagatgtgccaagcggcgaaagcc
atcggcaacactgaattagagaacaagttcgcggaaggaattgtgaagatcaagcgggat
atcgtttttgcagcaagtctgtatttgtag
DBGET
integrated database retrieval system
