Nematostella vectensis (starlet sea anemone): 5516250
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Entry
5516250 CDS
T01037
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58 isoform X1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
nve
Nematostella vectensis (starlet sea anemone)
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
nve04054
]
5516250
Enzymes [BR:
nve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
5516250
Pattern recognition receptors [BR:
nve04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
5516250
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C-RD
CARD_2
RIG-I_C
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
5516250
NCBI-ProteinID:
XP_032241932
LinkDB
All DBs
Position
Unknown
AA seq
1155 aa
AA seq
DB search
MQPKQRELITKRLQYFQHDFRPTELLPRLTCLTEADSQQVECDENNKGATRATWTLIDKL
KRRENGFEQFVLAVRCEGLGHIALLLDHSFEVSDEDILHEKEDTRRFYKIGSAVDIRITG
RITKKDLPDRQLDIEKLVAEKFAKLRSEDTKEIRKEFNKVLPRGIEFVQTKQMGGPLSPR
GSRHEEAKPEIELEPETEELSQKLNDVVLASEHAGSESESEKPSADQYMKDSVVAVFRFA
TIAAVDEFKGIWENGKFQEICQELLVTRPLSNMGEKKDRLPLELMMNFLEEDMERIKNIL
EDVEAEQEVERTGDDLLRSARGSDGHETDFLDEQDISINIPPVYLESNHGSALAHDLKLR
KYQEELAEPAIQGYNTVICAPTNSGKTFVAMEIAKQHLDKHSDHAKEEIWEDFASNKDSV
DKLNKRQKLTKIVENSQTGWRAVGGFDSDEQSSDSEDEKSIRKETGVTDCRKRRLTKDSG
DKPKSKECSVQRGFNGAVEIPDQITGPKVIFIVSTQNLVLQQRQRFEAYLSNYAVCDISG
VNSTEIPLKFLLKANDVVVLTAQILLNALQNKNELSSISLSDLSLLIFDECHHTNKNHSY
NKIMHQYIDLKLKKHKGLPQVVGLTASLGVGKSNTVENAHKHILQICANMDAQKINTVRE
NVNELKDCVTGGVPERKVIRVNTSQSLSPFTRACNQVMDKIEKAAKKSLPDLQQPPCNRV
SQQYRQWIEVISKQACALGLRQLTTYIEQLRQYHLALLTNDTVRMKDALTCLKEYFDTLD
ETKFTENDKLLHNLYHKAKELVENHVAIHGETPNPKLEELKKLLLGFHENDSKESKGILF
TVTRGSTVGLVEWIKESEDLKHKFRPKALVGGGDGVVGMSQQEQELIIEEFKKGVVNILI
ATSVAEEGLDIKDCSFVIRYDTYGNEISSTQARGRIRADQGQYVYLADARSKGHEREKLN
QYREILMTDAVAAVQKLTQDEYMKEIDQLQQKDARIRQIKSQLEARKRDVNQHTATARFY
CRKCNTFACEARDFRCVSGSHYVVISPEFKRDKIELKPHKKPKLIDGITMDTKVHCKKCG
EDWGVTAKIHGAEWPLLKINSFVVQIEGGPRKLYRKWTEAALNIKQVDDYLEVLAEEEAG
LNDSLMDDLSLDDDL
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgcaacccaagcagcgggagctgatcactaagcgactgcagtatttccaacatgacttc
cggccaaccgaactactaccccgcctcacctgtttgaccgaggcggactcgcagcaagtt
gaatgcgatgaaaataacaaaggagctaccagagccacatggactcttattgacaagctc
aagcgacgggagaatgggttcgagcagtttgtattggccgtgagatgtgagggattgggg
catatagcgctattacttgatcatagctttgaagtgagcgatgaggatatactgcatgag
aaagaagacaccaggagattctacaaaatcggatccgctgttgatattcgtatcaccggg
cgcattacgaagaaagatcttcctgatcgtcagctggacatcgaaaaactggtggcggag
aaattcgccaaattgcgttccgaggatacaaaggaaatacgcaaagaattcaacaaagtg
ctcccgcgcggaatcgaattcgttcagacaaaacagatgggcggaccgttgtcgccacga
ggaagcagacacgaggaagcaaaaccggaaatcgaacttgaaccggaaactgaagaatta
tctcaaaagttgaatgatgtggtacttgcttcagagcatgcaggatcagagagtgaaagt
gaaaagccgtccgctgaccaatacatgaaggactcagtggtcgccgtgtttcggttcgcg
accatcgctgccgtagacgagtttaaaggaatttgggaaaacggaaagttccaagaaatc
tgccaggaactgcttgttaccaggcccctgtcaaatatgggcgagaaaaaagaccgtctg
ccacttgaactaatgatgaatttcttagaggaagatatggagcgtatcaaaaacattctc
gaagatgttgaagccgagcaagaagtcgagaggactggggatgacctgcttcggtcagcc
agaggcagtgatggtcacgagaccgactttctggatgaacaggacatctctataaatatc
ccgccagtctaccttgaatctaaccacggctcggccctggctcatgacctcaagctccgc
aagtaccaagaggagctcgctgagcccgcgatccaggggtacaacaccgtcatctgtgcg
ccgaccaatagcggcaagacattcgttgctatggagatcgctaagcaacatcttgacaag
cactccgatcatgcaaaagaggaaatatgggaggattttgcttccaacaaggacagcgta
gataaactcaataagcgtcaaaaactcactaagattgtggagaattcacaaactggctgg
agggcggtcggtggatttgattctgatgaacaatcatcagactccgaggatgaaaaatct
atacgcaaagaaacgggtgtaacagactgtcgaaaacgtcgccttactaaagatagcggg
gataagcctaaatctaaggaatgctctgttcaaaggggctttaatggcgctgttgagata
ccggatcagataactgggcctaaagtaatcttcatcgtcagcacacaaaatcttgtgcta
caacagcggcagcgctttgaggcatatctcagcaattatgctgtatgcgacatttccgga
gtgaactctacagaaatccccctgaaattccttcttaaggctaacgacgttgtggtactc
acagcgcaaattctgctgaacgcgcttcaaaacaagaatgagctgtcctctatatcttta
tctgacctatccctgctgatatttgacgagtgtcatcacaccaataaaaatcactcgtac
aacaagattatgcaccaatatatcgacctgaagctgaaaaaacacaagggcctcccacag
gtggtaggcctcaccgcctctcttggcgtcggtaaatccaacactgttgagaacgcacat
aagcacatcctgcagatctgcgcgaacatggatgcgcaaaaaatcaacacggtgcgtgaa
aatgtcaacgagcttaaagattgcgtgacaggaggagttccagaaaggaaagtcattcgc
gtcaatacaagccagtcactgagtccgtttactcgagcgtgcaaccaggtgatggataag
atcgaaaaagcggcaaagaagtctctcccagacctccagcagccaccctgcaaccgggtg
agccagcaataccgccagtggattgaggtcatcagcaagcaggcatgcgccttagggctt
cgtcaacttactacgtacatcgagcaactgcggcagtaccacctggccctcctcaccaat
gacacggtacggatgaaggacgccctcacctgcctcaaggagtacttcgacactctggac
gagaccaagttcacagagaacgataaactactgcacaatctgtaccacaaggccaaagaa
ctggtggagaatcacgtcgcgatacatggcgaaaccccgaaccctaaactcgaggagctg
aagaaactgctcttgggattccacgagaacgactcaaaagagtccaaggggattctattc
actgtgacacgtggctctactgttgggctcgtcgagtggatcaaagagtcggaagacctc
aagcataagttcaggccaaaggcgctcgtcggtgggggagacggtgttgtgggaatgtct
caacaagagcaggaactcatcatcgaggaattcaagaaaggcgttgtaaacattctcatt
gcgacatctgtggccgaggagggcttggacataaaagattgcagttttgtcatccgttac
gatacgtatggcaatgagatatctagtacccaggcgcgtggccggattagggcagatcag
ggccagtatgtttatctggctgacgctcggtctaaaggccacgagcgagagaagctgaac
cagtaccgagagatactgatgacggatgcggtcgcggccgtgcaaaagctgactcaggac
gagtacatgaaggagatcgatcagcttcagcagaaggacgcgcgtattcgtcaaataaaa
tcccagcttgaagcgcgcaagagagatgtcaatcagcatacagctaccgctagattctac
tgccggaagtgtaacacctttgcgtgtgaggcacgtgatttccggtgtgtctcaggctcc
cattatgtcgtgatcagccccgagttcaagcgcgacaagattgaactgaaaccacacaag
aagcccaagctgatagacggcataaccatggatacaaaggtccattgcaagaaatgcggc
gaagactggggcgtgaccgcaaagattcatggagctgagtggccgctccttaagatcaat
agctttgtggtccaaattgagggcggccctcgaaaactctaccggaagtggacagaggct
gccctgaacataaagcaagttgatgattatttggaggtgctcgctgaagaagaggcgggg
cttaatgacagtttgatggatgatctgagcttggatgacgacttgtag
DBGET
integrated database retrieval system
