KEGG   Nematostella vectensis (starlet sea anemone): 5518436
Entry
5518436           CDS       T01037                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
nve  Nematostella vectensis (starlet sea anemone)
Pathway
nve03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nve00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    5518436
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:nve03041]
    5518436
Spliceosome [BR:nve03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    5518436
 Complex C
   U5 SnRNP specific factors
    5518436
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_EML_2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EIPR1 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th NBCH_WD40 Beta-prop_SCAP WD40_RFWD3 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Ge1_WD40 Beta-prop_SPT8 Beta-prop_DCAF4 ANAPC4_WD40 Beta-prop_WDR19_1st Beta-prop_IFT140_1st eIF2A WD_LRWD1 PEP5_VPS11_N MIOS_WD40
Other DBs
NCBI-GeneID: 5518436
NCBI-ProteinID: XP_001638394
UniProt: A7RQB4
LinkDB
Position
Unknown
AA seq 358 aa
MCAVQKSNMASKRRIEGEESPGALVPVLKKPKQNQLSVIDPKNAIQALPNRTSALESPIM
LLTGHEGEIYSSRFHPSGETLASVGFDRLIYLWNVYGECENFAVLKGHTGAIMDVHFSTD
GNTMFTASTDKTVALWDYETGARMKRLKGHTSFVNSCCPSRRGMQYVVSGSDDSTIKLWD
TRKRGCAQTFQNVFQVTAVAFSDASDQIFSGGIDNEIKVWDLRKNDVLYKMSGHTDTVTG
VQLSPDGSFLLSNSMDNTVRMWDVRAFAPMERCLKVFLGAQHNFEKNLIKCSWSPDGLMI
AAGSADRFVYVWDTNSRRILYKLPGHAGSVNDAHFHPTEPILLSCGSDKKLFLGELQA
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgtgcgcagtacagaaatccaatatggcgtccaaaagaagaatcgaaggagaagaaagt
cccggtgctcttgtacctgttttgaagaaacctaaacagaatcagctatcagtaatcgat
ccaaaaaatgctatccaagcgctgccaaaccggacgtcagcgttagaatctccaataatg
ttgctgacaggacatgagggggagatctattcgtctcgttttcatccttctggggaaacg
ttagcttcagttggattcgacagattgatttacctatggaatgtgtatggtgaatgtgag
aactttgctgtgctgaagggtcacacaggagcaataatggacgtacacttttctacagat
ggaaacaccatgtttacagcatccactgacaaaactgtggcactatgggactacgagaca
ggtgctagaatgaaacgactcaaaggtcacacatccttcgtcaatagctgctgtccatca
cgacgcgggatgcagtatgttgtcagtggctcagatgatagtacaattaagttatgggac
acaagaaagagaggctgcgctcaaacattccaaaatgtgttccaggtcactgctgttgct
ttcagtgatgcaagtgatcagatattctctggagggattgataatgaaatcaaagtatgg
gatttacgtaagaatgatgtcctgtataagatgtctggacacacagacacagtcacaggc
gttcaactcagtccagatggctcattcttactatccaactcaatggataacacagtccgt
atgtgggatgttagggcatttgccccaatggaaaggtgcttgaaagtgtttcttggagct
caacataacttcgaaaagaatctgatcaagtgttcctggtcacctgatggacttatgatt
gcagccgggtcagccgacagattcgtctacgtctgggacaccaactcacgtcgcatcctg
tacaagttgccaggccatgctggctctgtgaatgatgcacacttccatcctactgaacct
attttattatcatgtggaagtgacaagaaactcttcttaggtgaacttcaagcctag

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