Nematostella vectensis (starlet sea anemone): 5520396
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Entry
5520396 CDS
T01037
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nve
Nematostella vectensis (starlet sea anemone)
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nve03016
]
5520396
Enzymes [BR:
nve01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
5520396
Transfer RNA biogenesis [BR:
nve03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
5520396
Prokaryotic type
tRNA splicing ligases
5520396
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
ACP_syn_III_C
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
5520396
NCBI-ProteinID:
XP_001640223
UniProt:
A7RKF6
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MPRSYKEECSFLERLSDSAFLIKKGFVPNMKVEGKFYINEHLEKLMFDELRHWCGAQGIG
GFLPGVKQIANVAALPGIVGYSVGLPDVHSGYGFAIGNMAAFDMSLPEAVVSPGGVGFDI
NCGVRLLRTNLEEKDVQPVKERLAQSLFDHIPVGVGSKGVIPMGAKDLEDALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADSAKVSAKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
FAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIEVNDRQLACAHIKS
PEGQDYLKGMAGAANYAWVNRSSMTFLTRQAFAKVFNSTPDDLDMHLIYDVSHNIAKVEE
HFLDGRQRQLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMT
ETFGTTCHGAGRALSRAKSRRNLDYQDVLENLAQKGISIRVASPKLVMEEAPESYKNVTD
VVDTCHSAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgccccgctcatacaaggaagaatgtagctttttggagcgattatctgacagtgcgttt
cttatcaagaagggttttgttccaaatatgaaggttgagggcaaattctacatcaacgaa
catctagaaaaactcatgtttgatgagctgagacactggtgtggggcacaaggaattggt
gggtttttaccaggggtgaaacagattgctaatgtggctgctttgccaggaattgtaggg
tactcagtgggccttccagatgtacactctggctatggatttgctattggtaacatggca
gcatttgatatgtctcttcctgaagctgtagtgtctccgggtggagtgggttttgatata
aactgtggagttcgattactcaggacaaatctggaagaaaaagatgttcaaccagttaaa
gaaaggctggctcagtccctatttgaccacattcctgttggagttggttcaaaaggtgtc
attcctatgggagccaaggacctagaagatgctcttgagatgggtgtggactggtctctc
cgagaagggtatgcttgggcagaagataaggaacactgtgaggaatatggcagaatgcta
caagctgacagtgctaaagtcagcgctaaagcaaagaagcgcggcttacctcagcttgga
acactgggggcaggtaaccactatgctgagatccaagtcgttgatgagatttacaatgaa
tttgctgctaaaaagatgggaattgaccacaaaggtcaggtatgtgtgatgattcatagt
ggaagccgtggccttggtcaccaagttgctacagatgcacttgtggcgatggaaaaggcg
atgaaaagggataagattgaggttaatgacaggcagctggcttgtgctcacatcaagtct
cctgagggtcaagattacctaaaaggtatggcaggtgctgccaactatgcctgggttaat
cgctccagtatgactttcctcacaagacaggctttcgccaaagtgttcaacagcactcca
gatgacctagacatgcacttgatctatgatgtctcacataacattgctaaagttgaagag
cactttcttgatggacggcagagacagctcctcgtacataggaagggatcaacacgagcc
ttccctcctcaccatcctcttattcctgttgattatcagctaacagggcagcctgtgtta
attggtggtaccatgggcacatgtagttatgttctgactggtacagagaagggaatgacc
gaaacgtttggaacgacatgccacggagctggtcgagcattgtcaagagccaaatcacga
cgaaacttggactaccaggacgtgctggagaacctcgcgcagaaaggcatctcgattagg
gtggcttcacccaaactcgtcatggaagaggctccagaatcatataaaaatgtcacagat
gtcgtcgatacttgtcattctgccggaatcagtaagaaagccatcaagctgaggcctatt
gctgtcatcaaaggttaa
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