Nematostella vectensis (starlet sea anemone): 5521252
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Entry
5521252 CDS
T01037
Name
(RefSeq) collagen alpha-1(I) chain
KO
K19719
collagen type II alpha
Organism
nve
Nematostella vectensis (starlet sea anemone)
Pathway
nve04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
5521252
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nve00536
]
5521252
Glycosaminoglycan binding proteins [BR:
nve00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
5521252
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
5521252
NCBI-ProteinID:
XP_032222190
LinkDB
All DBs
Position
Unknown
AA seq
1463 aa
AA seq
DB search
MMSSVAFRLLALALLSSMVVSQDPDVPDPLPTDPPTEPPTDPPTPPPTEPPTPPPTEPPT
PPPTDPPTQPPRPTRKPFVPNPEEEARVELNVIGPPGPPGLPGSPGMTGAPGARGPIGDP
GPPGDKGPKGDKGPPGGLGPPGPPGPPGPPKIITIPGPKGPVMRPQINTGGASALQRVGD
PGAIGRTGRRGPDGLHGLPGPRGAPGDIGPTGPPGPMGPPGPQGRDAVDGEPGSPGRPGP
NGDPGDKGPTGDRGAAGLKGRAGHRGRRGRQGVKGTRGSDGERGQVGLPGLNGIDGPEGE
RGQQGPIGMTGPPGLAGGVGANGPSGRGGSQGPPGPPGAPGQPGPRGIKGPPGRAGGTGL
MGYLGEPGVVGGAGPKGSSGRPGDVGQAGASGPKGSSGDLGAAGPQGEAGPTGATGMTGD
PGPRGERGLAGNVGKSGSKGESGDKGQPGKPGKPGSRGQAGPAGKRGSPGDTGPQGAPGP
AGKRGMTGAQGVMGRTGADGPKGMIGDRGVRGAEGNKGESGAPGLIGAEGPVGEEGGRGR
PGKPGADGPEGLPGPAGDDGRPGENGAPGSRGNSGPAGFPGAKGKVGAPGKQGMRGDSGP
AGAQGERGIIGELGKPGEAGGPGQAGSAGEPGPAGEMGAKGATGPSGPAGSDGPSGKQGP
KGENGPDGLNGKPGQVGKIGTRGSDGEIGLQGATGERGNPGNEGQRGPPGPVGEGGPNGA
SGPAGNPGYQGASGKTGAPGESGDQGKAGGVGGPGEPGIAGTNGADGAMGQPGEKGTPGF
GGEVGVAGEPGSNGDPGERGDQGVMGRPGFQGLVGKVGPLGPLGLVGPRGIKGVAGERGL
PGGLGETGQQGMLGPAGAKGGLGEPGTDGDQGTQGAPGAQGPPGPTGPGGTAGVPGPPGR
AGPRGPPGDAGMQGSDGANGQPGLPGRDGVPGTVGESGPPGPAGPIGAVGDSGPRGERGE
LGIRGNKGPVGVEGPRGDSGDGGSDGKAGKEGKAGDRGAIGKTGNAGLPGSTGAPGAAGS
DGSVGKQGRKGITGDRGAQGKTGKQGPTGTPGTVGLRGVTGPDGSNGQPGRQGEPGKQGL
PGESGAQGDSGDEGDGGAKGDKGERGTGGSTGPQGSQGPKGVFGGVGLDGAEGEQGARGK
SGDFGPIGPPGPLGPPGPIGGLGPSGQKGDRGMQGPVGLRGTPGPPGPPGPAGTVGARWT
SEALQSYELGTQKTRENRLYRSSKSEGSNSEAEEPVDIFSEYIRLNFELQNYKYPIGSKM
YPARTCRDLHMCHPKLKSGNYWIDPNEGIPDDSIQVYCDFENNSTCIFPNNQTRGMESHR
RKWFSGPDGYKWFGKELRGFGTMKYLAEPSQLAFLRLLSDRARQNVTYHCLNSAAWSSGK
GDLNHSIKIKGDNGVELHASSSNKFKPQIIRDDCHIKDGKWRQTIITVDTSKPHRLPVLD
VAVFDIGGQGEEFGLDIGPVCFS
NT seq
4392 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcttctgttgcattcaggttgctcgccctcgcgctattgagttcgatggtagta
tcacaggaccccgatgtaccagacccactaccgacagaccctcccacggagccgccgaca
gatccacctacacctccccccacggagccacccactcctccccccacagagccaccaact
cctccccccacagatcctccgacacagcctcctcgtccaacgcgaaagccgtttgtacca
aatcccgaagaagaagcgcgggttgaattaaatgttattggaccacctggacctcctgga
cttcctggatcaccgggaatgaccggcgctcctggagcaagaggacctatcggagatccc
ggaccccctggtgacaaaggacccaagggagacaaaggaccacctggagggcttggacct
cctggaccccccggacctcccggacctccgaagatcatcaccattcctggacccaaggga
ccggttatgaggccacaaatcaacaccgggggagcatctgctctgcagagagtgggcgac
ccaggggcaataggtagaacaggccgacgcggacctgatggtcttcacggccttcctgga
ccgcgcggagccccaggtgacatcggaccgacgggaccgcctggccctatgggacccccc
ggacctcaaggacgtgacgccgtagatggtgagcccggatcgcctggaagacctggaccg
aacggtgaccctggggacaagggaccgactggagaccgcggcgctgcgggcctgaaggga
cgtgcaggacatcgcgggcgcaggggccgacagggagtgaaaggaactcgcggctctgat
ggcgaaaggggtcaagttggtcttcctggactcaacggcattgatggccctgagggagaa
cgcggacagcagggaccaataggaatgactggaccgccaggacttgctggaggcgtcggt
gccaacggaccatcaggacgaggaggttcacagggacctcctggacctcccggcgctcct
ggtcagcccggacctcgcggtataaagggcccccctggacgtgctggaggcacgggattg
atggggtacttaggagagcctggcgtcgtgggaggagccggacctaaaggctcctctgga
agaccgggtgatgtcggacaagccggcgcgtcaggacccaagggctcctcaggtgacctt
ggagctgctggaccacaaggtgaagcgggccctactggagcgacgggcatgactggtgac
ccaggcccacgcggcgagcgtggcttagcgggaaatgtagggaaatccgggagcaaggga
gaatctggagacaagggccagccgggcaaacctggaaaacctggatctagaggccaggcc
ggaccagcaggaaaacggggatctcccggcgacactggcccacaaggggcacctgggcct
gctggcaagaggggaatgacaggcgcgcaaggtgtgatgggaagaactggcgccgatgga
ccaaagggaatgattggagatagaggcgtgcgcggagcagaaggcaacaagggcgaatcg
ggtgcaccaggcctaatcggagccgagggaccagttggagaggagggtggccggggacga
cctggcaagcctggtgccgatggccctgaaggtctcccgggacctgcaggcgatgatgga
cgaccaggcgagaacggagcgccgggatcccgcggtaactctggcccagctggcttcccc
ggtgccaaaggaaaagttggcgctccgggaaaacaaggcatgcgcggtgacagcggacca
gcaggcgcccagggtgaacgtggtattattggtgagttagggaagcctggagaggccggc
ggaccgggacaagcgggatccgccggggaaccaggcccagcaggggagatgggtgctaag
ggggccaccggaccctcagggcctgcaggatctgacggaccttctggtaaacagggcccg
aaaggcgagaacggacctgatggcctcaacgggaaacctgggcaagtcggcaaaatcggg
acacgaggctcagacggcgaaattggattacaaggcgctactggcgagcgtgggaaccct
ggcaacgagggacaaaggggacctcctggacccgtgggcgaaggaggacccaacggcgcc
tctggaccagcgggaaaccctggatatcaaggagcgagtgggaagaccggtgccccagga
gaaagtggagatcaaggaaaagcaggcggtgttgggggcccgggagaacctggcattgcg
ggtacgaatggcgcagacggagcaatgggacagcctggcgaaaagggtaccccgggattt
ggcggtgaagttggagttgcgggagagcctggaagtaatggagacccgggtgagcgaggt
gaccagggagttatgggtcgtccaggcttccagggcttagttggtaaagttggacctctg
gggccgctcggacttgtcggaccacgtggaattaagggcgtggctggtgagagaggtctg
cctggcggcttgggcgagaccggacagcagggtatgctcggtcctgctggcgcaaaagga
ggtctcggagagcctggtaccgacggtgatcaaggtacccagggtgcaccgggcgcgcaa
ggaccacctgggccgactggacctggcggcacggcgggagttccgggaccaccggggcgc
gctggaccaaggggcccacctggcgatgctggaatgcaaggatctgacggagcaaacggc
cagccgggtcttcctggacgggatggtgtccctggtaccgtgggtgagagcggacctccg
ggacctgcagggcctataggggctgttggagactctggccctagaggagagcggggcgag
ctaggcatccgaggaaacaagggacctgtcggcgttgagggaccgaggggagattcagga
gatggtggaagcgatggaaaggctggaaaagaaggcaaagccggtgatcgtggagctatc
ggcaaaaccggaaatgcgggactgcccggaagcacgggtgctcctggtgcagctgggtcg
gatggctctgtcggaaagcaaggaaggaagggtataaccggtgaccgtggtgcccaagga
aagactggtaaacagggaccaacaggaacacctggcactgttggtttacgaggcgtgact
ggcccagacggttccaacggacaacccggccggcaaggagagccgggtaaacaaggactc
cctggtgaatccggtgcccaaggcgacagtggagatgaaggtgatggtggtgcgaagggt
gataagggagagcgtggaactggcgggtccactggtccacagggatcccaagggccaaag
ggagtgttcggtggcgttggccttgatggagctgagggagagcaaggagcgaggggaaaa
tctggtgactttggccctattggtcctcctggccctctaggaccccccggtccaatcgga
ggtctggggccatccgggcagaagggagaccgtggaatgcagggacctgttggactacgc
ggaaccccaggacctcccggcccacctggaccagcgggaactgttggagcgcgatggaca
tcagaagcgcttcagtcttacgagttaggaacacaaaagactcgtgaaaaccgcctctat
cgcagctccaaatctgaaggctccaattcagaagcggaagagcccgtcgacatattcagc
gagtatatcaggctgaatttcgagcttcagaactacaagtatcccatcggcagcaagatg
tatccagcacgcacttgcagagatctacacatgtgtcatcccaagctgaagagcggtaac
tattggattgacccgaatgagggcattcccgatgacagcatccaagtctactgcgacttt
gagaacaactctacttgtatcttccccaataatcagaccaggggaatggagagtcatcga
aggaagtggttctctggtcctgatggctacaaatggtttggtaaagaacttcgaggattt
ggcacgatgaagtatttggctgagccgagccagctcgcctttcttcgcctgctgagtgac
cgcgcacgccagaatgtaacatatcactgccttaactcggccgcgtggtcgagcggaaag
ggagacttgaatcactccatcaaaatcaagggcgacaacggcgtcgagctccatgccagc
agctctaacaagttcaagccccagataatacgtgacgactgccatattaaagacggcaag
tggcgccaaacaataataacagtcgacacaagcaagccacacaggctacccgtcttggat
gtggcagtgtttgatatcggaggacaaggggaagaattcggactagatataggccctgtc
tgcttctcttaa
DBGET
integrated database retrieval system
