Nematostella vectensis (starlet sea anemone): 5521566
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Entry
5521566 CDS
T01037
Name
(RefSeq) LOW QUALITY PROTEIN: general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
nve
Nematostella vectensis (starlet sea anemone)
Pathway
nve03022
Basal transcription factors
nve03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
5521566
09124 Replication and repair
03420 Nucleotide excision repair
5521566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nve03021
]
5521566
03400 DNA repair and recombination proteins [BR:
nve03400
]
5521566
Transcription machinery [BR:
nve03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
5521566
DNA repair and recombination proteins [BR:
nve03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
5521566
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_TFIIH
BSD
WASH-4_N
ParE_toxin
Motif
Other DBs
NCBI-GeneID:
5521566
NCBI-ProteinID:
XP_032222720
LinkDB
All DBs
Position
Unknown
AA seq
550 aa
AA seq
DB search
MAAVSESSVLLTVINTKYKKNSGVLQLLTNNLTWSPQGSSAPKIDCKYSEIKVQRISPEG
SSKVQLQVVLHDNSSYSIHFTGQNAKKERDDVKELLAQLIPAHRKKASKELEEKNRMLKD
NPELYQLYKDLVVSGVITPDEFWANRGQDTGATSKSTGVNQSIGLSSALLADMQPESSGC
NEVKYSLNADTIETIFRTYPAVKKKHEEVVPDQMTEKDFWTKFFQSHYFHRDRSAETRPT
ASDMFTECAKQDEKEQLASKLNLISDPMLDLXXXXXXPXQGYGSVPCDVPEQVSKNSTST
QSLFRRLNHHSLMVLHSTPSASTTSDGIPNEERNGTVDNQPAEPPAKKTRLREVTEYDDL
QEHSPIEPISLKIVTRNKYSGGPVTLPGINGNTSIPGHNAADVTTAIQYCQHEVNSWTPD
LTQALSSDQACHVLTEISPGGSLMETTSQANIHHTLSSTMKSEVLQQYMALTELLRHFWS
CFPVKTAFLEEKVARMGQSLEKYRNTKLEQLRGKLSEGDLHLIEHLTEMLEAATAKYRSW
EGLRAAKITR
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtcagtgagtcttccgtccttcttacagtaatcaacacaaaatataagaaa
aattccggagtattacaattgcttacgaacaatttaacatggtctccacaaggctccagc
gcgcccaagattgactgcaaatattccgaaattaaagttcagcgaataagccctgagggg
agctccaaggtccaactacaggttgtcctccatgacaacagctcatatagcatccacttc
accggccagaatgctaagaaagaaagggatgatgtcaaggaattactggctcaacttatc
cctgcacatcgcaaaaaggccagcaaggaattagaggagaaaaatagaatgctgaaggat
aaccctgaactgtaccaattgtacaaggatctggttgttagtggtgtaataaccccagat
gaattctgggcaaatagaggacaggacacaggagcaacaagcaaaagcactggtgtaaac
cagagtattggtctatcctctgcgctactggcagacatgcagcctgaaagttcaggatgt
aatgaggtcaagtacagcctaaatgcagacacgattgagacaatattcaggacatatcca
gcagtaaagaaaaagcatgaagaagttgttcctgaccagatgacagagaaggacttctgg
acaaagttttttcagtcccactactttcaccgtgatcgctctgcagagacgcgcccaact
gcatctgacatgttcactgagtgtgcaaaacaggatgagaaagagcaacttgcaagtaaa
ctaaaccttataagtgatcccatgttggatctgannnnnnnnnnnnnnnctccatgacag
ggttatggatcagtgccttgtgatgtcccagagcaagtttccaagaactccacctccacc
cagtcattatttcgccgccttaaccaccacagcctcatggttctacactccacaccttca
gcttctacaactagcgatgggattcctaatgaagaaaggaatggcacagttgataaccag
ccagctgaaccacctgcaaaaaagacccgcctccgtgaggtgaccgagtatgacgactta
caagagcactctcccattgagcccatttctctgaaaattgtcaccagaaataaatactca
ggaggccctgttacattacctggcattaatggcaacacatctatccctggacataatgcc
gctgatgtcaccaccgccattcagtactgccagcatgaggtcaattcctggacgccagac
cttacacaggccctgtctagtgaccaagcatgccatgtactgacggagatctcccctggg
ggctccctcatggaaaccacttcacaggctaacatccatcatacacttagcagtaccatg
aagtctgaagtactgcagcagtacatggctctgactgaacttctgcgtcacttttggtca
tgtttccctgtcaagacagcatttctggaggaaaaggttgcccgcatgggacagagctta
gaaaaataccgcaacactaaacttgagcagttaaggggtaaactcagtgaaggagatctg
catcttatagaacatctaaccgaaatgttagaagcagcaacagcaaagtatagatcatgg
gaaggattgcgtgcagcaaagattacaagatga
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