Nematostella vectensis (starlet sea anemone): 5522006
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Entry
5522006 CDS
T01037
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
nve
Nematostella vectensis (starlet sea anemone)
Pathway
nve03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
5522006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nve03021
]
5522006
03019 Messenger RNA biogenesis [BR:
nve03019
]
5522006
Transcription machinery [BR:
nve03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
5522006
Messenger RNA biogenesis [BR:
nve03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
5522006
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_C
zf_PCFS4
VHS
zf_UBZ
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
5522006
NCBI-ProteinID:
XP_001641783
UniProt:
A7RFH3
LinkDB
All DBs
Position
Unknown
AA seq
1787 aa
AA seq
DB search
MGSEEEGAIEEYASSLADLTFNSKPLINVLTMLAEENGQYAASIVKLIEKRIQTVAQQYR
LPSLYLLDSIIKNVGGDYLMLIAQSLVSVFVAVFAKGDEKVRKDLYKLRNTWPQYFSNKV
LYELDVKVRGIDPGWPINAPAPPPSPSIHINPKFLMKTENLGPASHPIQVAPTPVVVDIQ
KNEHQQRLLELQRLQEEQLRLTELEIQEHQLKKELILKKQEQERQKLLQQLRNEPSTSVL
AGITQTWTTTPVMTVAEPTRGSQDVVPSRDPRLRHKEQTPTRETNSTEEQKLTGEMKIEL
HPDRNRSVQLSSISSRGAIQGSPSPQEREQSRKESSVQKDQPKSFHSQKTWNDRPRSSDV
NTIRHSAHQKEFSKEEPVRRREELRQPVSDYPRVPGRSVHDRKRSRSSSPTDDRDRRPHP
TRGGSSRQQERFRREGRRRSLEDNDRRLEGFGPSVDNKEGFRGRGFRGRGRGGYGNVVSR
RENDKLNNKEFDGVKENRGGNIKNSRDSAQRERERESKDKPKLHFKKLDRDEKDLRPNTR
NDSPPERHERSAGPVTRPGKRPSPVPQQNKEPPSKKPKPLLSAKELSEIRLHHGSTEPVD
PASIPPLMGGGLPKQQRYESTGPQCDVPHELSLEHREVILKEAENRLTEGLISKDQYVEL
IDKLFEFYELQRQVEWEDKQILHQEHVPMEQEHEVVSPFGDIKIPARLDQPIQKVDPGHD
MPSKGRGENLSVGKSNQKPREEPRVKVPSVEGSLNFEEEEAIGSPRIIPDLGEIRIPARL
DQPVQRPERLPSLEGNSILGSPSSDVGNESLVPPGPDVQSHRTEHELAPKRRGEAVPVEE
KGPAKRGRRQRGGRRRNYRKQGDDAMAQPRNPPEIDEPNIKKGLLGDKGQLAMDESSSQE
VRRGSPHREEPIRRGGPLSEGHPMRADMPDDVLHREEQMRAGPSSDNHPMRGNTPVDLLH
REEPMRRGVLVPEGHPVRGNKPAIDLPHREGLYGRGGPPHEGGPRQQGPRFYKEPPFEEG
GSRRGGKNRRGRRRGGPPRRDGPYRDEPGFIDTPMGRGMHQRDMPPEWHPAGNPRRVDEG
PYMHDGPPHINRHPFIEQGPVEIPISHSGPWQGDIDSHMVHADRHLHDHPDRHLHEHPDR
HPHDHPDRLTHDRPGLIMGQDRHMADYREPHREPGGVHEGPFPHQPHPNGHQPMAFGHGR
PRGDVPAHHGGPIPISDGPGGLQGPPLIPGSPHRGASPMPHEPPTPTRMEKKTVDDLFRK
LCQAGIIKTVTQEVETPPRVATPPGQPPLPVPRPAPAHAPAEVPLTQLILQQMIEKSKEA
ATKIPEISLDPEDLKKRYSGIIMMLYEGTQCSSCGLRFPGEEAAMYREHLDWHFRRNRRE
KDGRRVAHRQWYIPVEDWLDYEEIMDPEDKAHSSFFDLERADEPDAQQATDSESCPVLAS
DTDAEASCSVCFEKFEQFWDESNEEWHYKDALRFEGKTYHKLCYLDSKLSVEEAELEVEE
GEELQSPTLDEPNIKQEKVEEQLESVQSQEEAMDLDEKKTVVDQRALIESQAGNQVAMNV
EVKQESNGNEEEERISKVEVKVEKVGEVEILEKNDKAILSGNSKTTTCNASDKNSSVITF
TPSDEGSKVVPSVPSDSDSNVQSSKTVVSTVLEVESKNVSSTEESSKADVNITVGASTTN
VSTSSDKSVTSQLLEDKIGSALPTESDKNGKSVIVIASDANDKTVHSPTPDEKIKELESL
DGGSQKQTGSDVSTKMDTTSDLNVKIELNENLGIPDNKEACGIEQKL
NT seq
5364 nt
NT seq
+upstream
nt +downstream
nt
atgggatctgaagaggaaggagcgatcgaagagtatgcctcctccctagcagatctcaca
ttcaactcgaagccgctaataaatgttcttacaatgttggctgaagaaaacggccagtat
gcagccagcatcgtgaaactcatcgagaaacgcatccaaacggtggctcaacagtatcgg
ttgccctctctctacttgttggactccatcataaagaatgtgggaggagactatctaatg
ctcattgcacaaagccttgttagtgtttttgtagctgtctttgcaaagggtgatgagaaa
gtccgaaaagatctatacaagctacgtaacacctggccacaatacttttccaataaagtg
ctttatgagcttgatgtgaaagtgcgtggcattgatccaggatggccaatcaacgcccca
gcaccacctccgtcaccgtcaatacatatcaatcccaaattcttaatgaagactgaaaat
cttggtcctgcaagtcatcccattcaagtagcccctacccctgttgtagtggacatacaa
aaaaatgagcatcagcagagactgctggagttgcagaggttgcaagaagaacagcttcgt
ctgacagagctagaaatccaggaacatcaactcaagaaggagcttatcctcaagaagcaa
gagcaggagcgtcagaagctcttacaacagcttaggaatgagcctagcacttctgtactt
gctggcataactcaaacatggacaactaccccagtcatgacagttgcagagccaaccaga
ggcagtcaagatgttgttcctagcagagaccctcgactaaggcataaagaacagactcca
actcgtgaaaccaatagtacagaagaacagaagctcacaggagaaatgaagattgagcta
catccagatcgaaatagatctgtgcaactgtctagcatatcttctcgaggagccattcag
ggttctccaagtccacaagagcgagaacagtctaggaaagaatcttcggttcagaaggat
caacctaaatcgtttcacagccagaagacctggaatgatagacccaggagctctgatgta
aataccataagacatagtgctcaccaaaaggaattttctaaagaggagccggtcagaaga
cgggaggagctgcgacagccagtctcagattaccccagagtgcctggtagatcagttcat
gacaggaaacgaagcagaagttcatcacccactgatgacagggatagaagaccccaccca
actcgtgggggctccagtcgtcaacaagagaggtttaggagggaaggtagaagaagaagc
cttgaagataacgacagaagattagaagggtttggtccttcagtagataataaagaaggg
tttagaggaagaggtttcaggggaaggggaagaggtgggtatgggaatgttgtaagtagg
agagagaatgataaattaaacaataaagagtttgatggtgtgaaagagaaccggggtggt
aatataaaaaatagcagggattcagcccagagagaacgagaaagggagtcaaaagacaag
ccaaagctgcattttaaaaagcttgacagggatgagaaagatttaagaccgaataccagg
aatgatagtccaccagaaagacatgagagaagtgcagggccagttaccagacctggcaaa
cgacccagccctgttccacagcagaataaggaaccaccatcaaagaaaccgaaacccttg
ctatctgcaaaggaactatcagagattcgattgcatcatggctctactgaacctgttgac
cctgcatctattccacctctgatgggtggaggacttccaaaacagcagcgatacgagtca
actggcccacagtgtgatgttccacatgaacttagcctggagcatagagaggttattctt
aaagaggccgaaaatcgacttacagaaggtcttatttccaaggatcagtatgtcgaattg
attgataaactatttgagttttatgagctacaaagacaggtggagtgggaagacaagcag
attcttcaccaggaacatgtaccaatggaacaggaacatgaagtagtttcaccttttggt
gatatcaaaattccagcaaggcttgaccaacccatccaaaaggtagacccaggtcatgat
atgccaagtaaaggccgaggtgagaatttgtctgttgggaaaagtaatcagaagccaaga
gaagagcctagagtgaaagtgcctagtgttgagggaagtctgaattttgaagaggaagaa
gctataggaagtcccagaattatcccagacttaggagaaattcgcattccagcaagactt
gaccagcctgttcagagaccggaaaggcttccaagtttagaaggtaattcaattttagga
agtcccagttctgatgttggcaatgaaagcttagtaccacctggcccagatgtgcaaagt
cacaggactgaacacgagttagcacccaaaagaaggggggaagcagttcctgttgaagaa
aaaggtcctgcaaaaagaggaagacgacagagaggtggaagacgcaggaattatcgtaaa
cagggtgatgatgcaatggctcaaccaagaaaccctccagaaattgatgaaccaaatatc
aaaaaaggactccttggggacaaagggcagcttgcaatggatgaatcttcttcacaagaa
gtcagaagaggtagccctcacagagaagaaccaattagaagaggtgggccactctctgag
ggacatccaatgagggcggatatgcctgatgatgtgctacatagagaagaacaaatgcga
gctgggccatcatctgacaaccatccaatgagggggaatacgcctgtagatctactgcac
agagaagaaccaatgagaagaggtgtgctggttcctgaaggccatccagtgagggggaat
aaacctgcaattgatctgccacacagagaagggttgtatggcagaggcggtcccccacat
gagggaggaccaaggcaacagggacctagattttacaaggaaccaccatttgaagaaggt
ggctcaaggagaggtggtaaaaataggagaggaagaaggagaggaggcccacccaggaga
gatggcccttacagagatgagcctggttttattgatactccaatgggaagaggaatgcac
caaagggatatgcctcctgagtggcacccagcaggaaacccacgcagagtggatgaaggg
ccatacatgcatgatggaccaccacatattaacaggcacccatttattgagcagggtcct
gttgaaatcccgatcagtcatagtgggccatggcagggtgacattgattctcatatggtg
catgcagatcgacatctgcatgatcacccagacaggcatctgcatgaacacccagacaga
catccgcatgatcacccagacagacttacacatgatcgccctggtctcataatgggacag
gatagacacatggcagattacagggagcctcacagggaaccagggggagtgcatgaagga
ccatttccacatcagccacatcctaatggacaccaacccatggcgttcggccatggaaga
ccaaggggtgatgtgccagctcaccatggaggccctatccccatctctgatggccctggc
gggttacaggggccaccactaataccgggatcgccacatagaggtgcaagccccatgcct
catgaacctccaacaccaaccagaatggagaagaagacagttgatgacttgttccggaag
ctttgtcaggcaggaatcatcaagactgtcacacaagaagtagagactcctccacgtgta
gcaaccccacccggccaaccacccctgccagtacctcgccctgctcctgcccatgcacca
gctgaagtaccactaacacaactgatactacagcagatgatagagaaaagtaaagaagca
gcaaccaaaattcctgagataagccttgacccagaagacctgaaaaaacgctacagtggt
attatcatgatgctgtatgaagggacgcagtgttcctcatgcggactgcggtttccagga
gaggaggcagcaatgtatagggaacatcttgactggcacttcagaaggaaccgcagagag
aaggatggaagacgtgttgcgcacagacaatggtatatcccagtagaggactggcttgac
tatgaggaaatcatggatccagaagataaagcccatagttcattctttgacttggagagg
gctgatgagcctgatgcacagcaggccacggattctgaaagctgtcctgtccttgcaagc
gacacagatgcagaagcgtcttgcagtgtttgctttgagaagtttgagcagttttgggat
gagagcaatgaagagtggcattacaaagatgcattgcgtttcgaaggaaagacctaccac
aaactctgttacctggattcaaagttgagtgtggaggaggcagaactagaggtcgaggaa
ggtgaggaactccagtcgcccaccctagacgagccaaatatcaaacaagagaaagtcgag
gagcaattagagtcagtgcaatctcaggaagaggcaatggacttggacgagaagaaaaca
gtagtggaccagagagcgctaatagaatcacaagctggtaaccaggtagccatgaatgtg
gaggttaaacaagaaagtaatgggaacgaagaggaagaacggattagcaaagtagaggtg
aaggttgagaaagtgggtgaggtagaaatcttagagaaaaatgacaaagctattttatca
ggaaatagcaagacaactacttgtaacgcatctgataaaaatagctcagtcataaccttt
actccatcagacgagggtagtaaggttgtgccctctgttccatcagacagtgatagcaat
gtccagtctagcaaaactgttgtttccacggtattggaggttgagagtaagaatgtaagt
tccaccgaggagtcgagtaaagctgatgtaaatataacagtgggggctagcacaactaat
gtctcaacttcatcagacaagtctgtcacttctcagctgttagaagacaaaatcggcagt
gctctgcctactgaatcagacaagaatggcaaatctgtgattgtaattgcatcagatgcg
aatgataaaactgtccactctcctacaccagatgagaagatcaaagaattagaatcgctt
gatggtggttcacaaaagcaaacagggagtgatgttagtacaaaaatggacactacttca
gatttaaatgttaagattgaattgaatgagaatcttggtattcctgataataaagaggct
tgtggaattgaacagaaattataa
DBGET
integrated database retrieval system
