Neodiprion virginianus: 124297277
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Entry
124297277 CDS
T09046
Name
(RefSeq) collagen alpha-1(IX) chain
KO
K06823
collagen type XVIII alpha
Organism
nvg
Neodiprion virginianus
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nvg04147
]
124297277
00535 Proteoglycans [BR:
nvg00535
]
124297277
00536 Glycosaminoglycan binding proteins [BR:
nvg00536
]
124297277
Exosome [BR:
nvg04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124297277
Proteoglycans [BR:
nvg00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
124297277
Glycosaminoglycan binding proteins [BR:
nvg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124297277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
124297277
NCBI-ProteinID:
XP_046604088
EnsemblRapid:
ENSNVRG00000003339
LinkDB
All DBs
Position
2:complement(26189526..26337124)
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AA seq
1178 aa
AA seq
DB search
MWPSFSTLVILSAVFITVRNQAFDPFNEKNAMSWELLRSVMKAFPEGKFIQFTSGLDKLL
AYKLLPGSDIKRPHRLHLPDKLPKEFTLVASFKTLQRSGPSYLFAVLNPLDTVIQLGIKI
SDGPGTNQNVTLLYTNSDQHSLSDEIATFTVQRLVNKWTEIVFRVTTTDVTLYVNCHEFG
KQKVTRIPSELIFDTASKLYIAQAGPNIKGNFYGILQSLDLYQGTDPYLVKCNIGNDFHF
PDAEGGSGNDSDLASLVDVEHLFDKNEDDDDDDRQYPIIPPPPPPPNMDPRGQKGDKGDK
GEKGESVRGPPGPTGPPGPGYDGDQKGIVGPQGEPGEKGEPGTCSCNTTALMSSFTMPKM
MQGQKGETGASGAEGKQGLPGLPGAAGPPGERGQPGMKGPKGDMGITGADGVEGPQGRKG
EAGRDGVPGEKGATGPPGPPGKGEISGYDPSWKPRSMYRMEGITMRPGLPGHKGDPGTPG
ERGPKGEPGVAGAKGVKGEMGLKGTKGDHGKDGSSGLQGFKGEPGSPGAPGVPGAPGANG
TPAEKGSKGDAGPEGKMGPTGPPGPPGPKSEGGINVGDIDPGEKGDKGDKGDQGFKGDFG
SKGEKGDRGDLGPAGIPGVNGIQGPQGNKGEPGKDGLPGSSGTPGTKGERGEKGPPGVTA
IAGPGDYVTIKGEKGARGRKGKQGSPGPAGPPGPAGKNGATGEIGLPGWMNGKGRPGPAG
IPGNPGGTGSKGDKGEPGAPSPYGLSVGVKGDKGDAGTPGTPGQPGRDGQRGPSGPPGPA
GPPSLGKYIPVPGPPGPPGPPGSPGLSFIGQKGEPGIRRGHIFMDRGDSRYGSRQGPRSS
LDEIKALRELKQLKELKEHYGSGTVSTRGPPESTTKIVPGAVTFQNTEAMTKMSAVSQVG
TLAYIIDEEALLVRVNNGWQYIALGSLLPITTPAPPTTAPPPIKPPFEISNLVNQILLKT
DGTGWYPKMLRMAALNEPITGDMHGIRGADYSCYRQSRRAGFRSSTFRAFLSSRVQNVDS
IVRFADRDLPIVNTKGDVLFNSWKEMFNGDGAYFSQSPRIYSFSGKNILTDFSWPEKVAW
HGSHKYGERAMDTYCDAWHTSSSDRYGLGSPLNGERLLEQIRYSCDSKFALLCVEVTTQT
SRRRRDVDNEEQFDVMEDDDVELSEEDYNRHLAELMEY
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgtggcccagtttcagcactttggtcatcttatcggccgttttcatcaccgtgcgaaat
caggcgttcgatccattcaacgaaaaaaatgcgatgtcatgggaattgttgcggtcagtg
atgaaagcgttcccagaaggaaaattcatacaatttacttccgggttggacaagcttctg
gcctacaaacttttacccggatcggacatcaagagaccccacagacttcatttgccggac
aaattacccaaggaatttacgctcgtcgcctctttcaaaaccctccagcgtagtggaccc
agttatctcttcgccgtacttaatcctttagacaccgtcatccagctgggtatcaaaatt
tcggacggccccggaaccaatcagaacgtaacgctcctctacactaactcagaccagcat
tctctgtccgacgagatagcgaccttcacggttcaacgtctggtcaataaatggactgaa
attgtcttcagagtcacgaccaccgacgtcacactctatgtaaattgtcacgaattcggg
aagcagaaggtaaccagaattccgtcggagctcatcttcgacaccgctagtaaactgtac
atagcacaggctggtcccaacattaaaggaaacttttacgggattcttcagtcgctcgac
ttgtaccaaggaactgatccgtatttggttaaatgcaacatcggaaatgactttcatttc
ccagatgccgagggggggtcaggtaatgattcagatttagcctcattagtcgacgtggaa
catttattcgacaaaaacgaggatgacgatgatgacgacagacagtacccgatcattcct
ccacctccaccgccgccgaatatggatccgagggggcaaaagggggataagggagacaaa
ggggaaaaaggtgagagtgtcagaggtccaccaggacccacgggaccaccgggacctggc
tatgacggcgatcagaagggaattgttggccctcaaggtgaacctggagagaagggagag
cctggcacatgttcgtgtaacacaactgccctcatgtcgtccttcacaatgccaaaaatg
atgcaggggcaaaagggtgagacgggtgcgtcgggggcagaaggaaaacaaggcttaccg
ggattgccgggcgccgcagggcctcctggtgaacggggccaaccgggtatgaagggcccc
aaaggcgacatgggcataacaggagctgatggagtggaaggtccgcaaggtcggaaggga
gaagcaggccgagacggtgttcctggagaaaagggggccacaggtcctccaggtcccccg
ggaaagggagagatttccggatacgaccctagctggaaacctaggagcatgtacaggatg
gaaggaataacgatgcgccccggacttccgggccacaaaggtgatcctggtactccagga
gaacgtgggcctaagggggaacctggggtggcgggtgcgaagggagtgaaaggcgaaatg
ggtctgaagggtacgaagggtgaccacggaaaggacggctcatcagggctccaaggattt
aagggagagcccggatcgcctggagcaccgggagttccaggagctccaggagcaaacggc
acgccagctgaaaagggcagcaaaggagacgctggtcccgaaggaaaaatgggacctacc
ggacctccagggcctccaggacccaagtcggaaggtggaataaacgttggtgatatagat
ccaggtgagaagggcgacaaaggagacaagggtgatcagggattcaagggtgatttcggc
tcgaagggtgagaagggtgaccgaggggatttgggtcccgccggtattcccggggtcaac
ggaatccagggtccccagggcaacaagggcgaaccaggaaaagatgggctgcccggatcc
agcgggactcccgggacgaagggcgaacggggtgagaaaggaccaccaggagtgacggcc
attgcgggtcctggggattacgtgaccatcaagggcgaaaagggcgctaggggaaggaag
gggaaacaaggatcgccgggaccggctggacctcctggacccgctgggaaaaatggcgcg
actggagaaattggactgccgggctggatgaatggaaagggtcggcctggtccagcagga
attcccggtaatccaggtgggacgggatccaagggtgataagggcgaaccaggcgctccg
agtccttacggactttccgttggggtcaaaggggacaaaggagatgccggaacacccggg
actcctggtcagccaggtcgggatggtcagcggggtccttcaggaccacctggtcccgca
ggtccgccgtcgctaggaaaatacattccagttcctgggccaccaggacctccgggtccc
ccaggttcacccggattatctttcatcggccagaagggagaacctggcatcaggcgaggt
catatctttatggaccggggagacagccgttacggatctagacaaggaccgagaagcagt
ttggacgagataaaggctctccgagagcttaaacagctcaaggagctcaaagaacactac
ggatccggtaccgtgtcaacgcgaggtccaccggaaagtacaacaaaaattgttcctggt
gctgtgacattccaaaatacagaagccatgaccaagatgtcagcagtcagtcaagtcggc
acattggcgtacataattgacgaagaagctctgcttgtcagggtgaataacggatggcaa
tacatcgctctcggatcgctcctaccaatcacaacgccagccccgccaacgacggctcca
cccccgataaaaccaccgttcgagatttcaaacttggtgaatcaaatcctgttgaagaca
gacggtacagggtggtacccgaaaatgctgcgaatggctgcactaaacgagccaattacc
ggtgacatgcatggaattcggggcgcggattattcctgctaccgacaatcgaggcgagct
ggcttcaggagcagcactttccgggcgtttttgagctcaagggtacaaaatgtggacagc
attgtcagattcgccgaccgagatctgccgatcgtgaataccaagggagacgtcctgttc
aattcctggaaggaaatgttcaatggagacggcgcctacttttcgcaaagcccgagaatc
tacagcttcagtggaaaaaatatcctgacagatttctcttggcctgaaaaagtcgcttgg
cacggatcgcacaagtatggcgaaagggcgatggacacttactgcgatgcttggcatacc
agtagctcggatcgttacggattgggttctccgttgaacggagagcggcttctggaacag
atccgatattcgtgcgatagtaaattcgctctattgtgcgtggaggtgactacacagacg
tctagacgtcgcagggatgtagataacgaagagcaatttgacgttatggaagatgacgat
gtagaattgtccgaagaagattacaacagacacttggcggaactgatggaatattaa
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integrated database retrieval system
