Neodiprion virginianus: 124297420
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Entry
124297420 CDS
T09046
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
nvg
Neodiprion virginianus
Pathway
nvg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124297420
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nvg00536
]
124297420
Glycosaminoglycan binding proteins [BR:
nvg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124297420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
124297420
NCBI-ProteinID:
XP_046604383
LinkDB
All DBs
Position
2:complement(14813995..14825448)
Genome browser
AA seq
1774 aa
AA seq
DB search
MRVDYLSQPWTSLFCVRIAIFLSIMCLISKPVVTGITLQDIGIGTLDLMDVTGILQEPAG
VNVSMGRCDSSKGAYDISAAELLTVDTATLFPNEFPQDFSILVVTKQKPGSRDAAILTIY
SDFGDEQLMLSLGDDVTLRYGNLNVESVSFGVNVSNGEWHRLGLSIKGDAVTLIVDCSLQ
ITKELRRNLSIPISTSGIIIVGRQLTNKNVYTGEIELLKLAPNPDAAYEICTVFALNCGY
QHRRPPAPTISHDTHIPGRISGFASSSDYQSRFHESSSVEAFPTSNQQFSQSSNTDGSSF
EIYGVDRDQESMMERRGSAGSFVRQNSSASYDGSIDQEYEAEKDEDEDYIYAPIEPNTTL
GEPPTTISPPNDTFTEIEESTTEEYDTSESTNSGRTPHYSPTEKFDVYGYYTIPGPPGPR
GYPGPVGAPGLPGKKGEPGRDGLFGMQGAPGPPGHVFMIPMNQQGNDKGPDSQPEAFRQM
LSQHMMSMRGTEGPMGLTGIPGPEGPPGSQGQKGEPGYIGESGLRGERGLPGSPGREGRR
GRPGRDGDRGLTGPPGMRGEQGLPGLPGLPGDKGERGFQGGKGDQGLPGHEGMQGEDGVP
GLPGLPGELGPRGFIGPRGFPGLPGNPGIPGSEGAPGTKGNTGPAGQPGPPGQSGPMGPV
GAPGPQGVMGPTGLVGPHGKSGMPGLPGADGPPGHPGNPGMPGSKGEQGPQGPQGPIGFP
GNRGVKGDEGKRGAVGDRGDKGERGMEGEKGDLGTKGEPGQSGPQGIPGLEGLEGPKGFE
GPRGETGQPGLPGEKGKIGIPGFAGYPGNAGEKGDKGQAGRSGPAGDKGERGNTGMSGER
GETGPRGFRGARGRRGSEGLPGPKGDTGQPGPPGLQGEAGPPGMEGPRGFIGLPGQQGLN
GKVGIPGAPGERGSAGKSGPPGPPGVPGVVGPPGPSGEPGPPGEPGTPGSPGLPGEPGMP
GEQGKEGPPGPMGPTGKEGSPGQSGLPGFPGERGMNGLPGIAGLKGEMGPLGPPGTTGDK
GAQGEPGKDGPPGSEGRQGPKGPPGAVGLKGEMGEPGLPGPTGRDGLPGLRGLPGPPGPV
GVPGEDGDKGDIGPPGEKGFKGSQGESGPAGPPGIQGMRGEPGPTGPSGEKGPPGEIGRQ
GSKGEEGPMGVPGPAGPIGLQGLPGPTGIKGDIGDDGPTGPVGPAGTPGEQGSRGPKGIE
GVQGPPGFEGRQGDKGDAGTPGPPGPPGIEGKPGERGAVGPKGEEGKAGPVGSPGGPGIN
GPEGPKGHAGAPGFPGPPGEPGIMGPKGEPGKDGDEGRPGEAGATGEMGSPGKEGEPGPP
GKPGPEGPAGMQGNTGLPGEKGDLGPPGAPGLQGRIGPQGEPGPQGSSGPRGLPGAAGEN
GPPGLSGAVGQPGKIGASGPRGPKGDRGRRGPKGHRGELGHIGIKGDQGEKGERGPKGPV
GPEGAKGAVGPQGLMGPKGNDGPQGLPGLEGPPGLKGMMGGEGTKGDAGPPGPPGPPGPP
AEQLMIPPELFLQRDEFSGRKQRDVEPKNDKDDVQDNIKNHSEEELGPKFIDMYSSIYTM
RQELDRIRKPMGTRENPVRTCKDLFYGHPQFSDGWYWIDPNIGMPDDAVYVYCNISASGE
TCVFPDMHSSQMPNIPWRKENEHGDWYSNLRGGFRITYESIGVVQMNFLRLLSQEAYQNF
TYTCINSAGWYSVPGYNHDLALKLLGENEDKFSYGGTRPSVIVDGCKTRKSKSETVFVVA
TKKLKQLPLIDFYPIDYGLPHQAFGFSVGPVCFK
NT seq
5325 nt
NT seq
+upstream
nt +downstream
nt
atgcgagtcgactacctgtcgcagccatggacgtcgctgttctgcgtccggatagccatc
tttctctccatcatgtgtctcatctcgaaaccggtggtaaccggtatcactcttcaggac
atagggattggaactctagacttgatggatgtcaccgggatcctgcaggaacctgcagga
gttaatgtatccatgggacgatgtgattcgagcaagggggcatacgacatttcagcagcg
gaacttctaacagttgacactgcgacactatttccaaatgaatttcctcaagatttttca
attcttgtagtcaccaagcaaaaaccaggaagccgcgatgccgcgatactcacgatttac
agtgacttcggcgacgagcaactcatgttgtctctaggagacgatgtaactcttcgttac
ggtaatctcaatgtcgagagtgtttcatttggtgtaaatgtttcgaatggagaatggcat
cgtcttggattaagtatcaaaggggacgcagtcactttaattgttgattgtagccttcag
ataacaaaagagttacgtagaaatctttccatacccattagtacatctggaataattatt
gttggccgacaattgacaaacaagaatgtgtatacgggagagatcgagcttttgaagctt
gctccaaacccagatgcagcctatgaaatctgtacagtttttgctctaaattgcggctac
caacatcgccgaccaccagctccaacaatttcgcacgacactcatattcccggtcgtatt
tctggcttcgctagttcttcagactatcagtctagatttcacgaaagttcatctgtcgaa
gcgtttccgacttctaatcagcagtttagccaatctagcaacactgacggtagcagcttt
gagatatacggagtcgatagagaccaagaaagtatgatggaaaggagaggatcagcggga
agtttcgtccgacaaaattcatctgcatcttatgatggatcaattgatcaggaatacgag
gcggaaaaagacgaagacgaggactacatttacgcccccatagagcctaacacaacccta
ggcgaacctccaactacaatatcaccgccgaatgatacgttcaccgaaattgaggaatcg
acaacagaagaatacgataccagcgagagtaccaattctggtagaacaccgcactattca
ccgaccgaaaaattcgatgtctacggttactacaccatccctggaccgccgggtccccgc
ggttatccagggccagttggagcacctggattaccggggaagaagggtgaacctggaaga
gacggtctctttgggatgcaaggtgcaccaggacctccaggacacgttttcatgatacca
atgaaccaacaaggaaatgacaaggggccagattcacagcctgaagccttccggcagatg
ttgtctcagcatatgatgtccatgcgtggcactgaaggcccgatgggactgactggtatt
ccggggcccgagggaccacctggttctcaagggcaaaaaggtgaaccaggatatattggg
gaatcgggactgcggggcgaaagaggcttgcctggatcccccgggagggaaggacgacgc
gggcgtcctggaagagacggcgatagaggtcttactggtcccccgggaatgaggggagaa
caaggtttgccaggtctacctggtctccctggagataaaggtgagagaggctttcagggc
ggcaagggagatcaaggacttccagggcacgaaggaatgcagggggaggatggtgtacca
ggcctgccaggtttacctggagaattaggtcccagaggatttatcggtccgcgtgggttt
cccggactcccagggaaccctgggattcctggtagtgaaggagcacctgggaccaaaggt
aatactggccctgctggtcaacctggaccaccaggtcagtctggaccgatggggccagta
ggagctcctggtccacaaggagtaatggggcccactggtctagtgggtcctcatggaaaa
tccggaatgccgggactaccaggagcagatggtccccctggccatcctggaaatccaggg
atgccaggttcaaagggtgagcaaggtcctcaaggtccgcaaggaccaatcggattccca
ggcaaccgcggagtaaaaggtgacgaaggcaagagaggcgcagtcggagatcgaggtgac
aagggagaacgcggtatggaaggcgaaaagggagacttgggtacgaaaggtgagccagga
cagtctggacctcaaggtatacctggcctcgagggtctggaaggtcctaaagggtttgaa
ggaccacgaggcgaaacaggacaacctggacttcctggggaaaagggaaaaattggaata
cccggattcgctggttatcctggtaatgctggagagaagggagataaagggcaggcgggt
aggtctggaccagctggagataagggtgaaaggggtaacaccggaatgtcaggcgagcgt
ggcgaaacgggcccaagaggattccgtggtgctcgcggtcggcggggatctgagggatta
cctggtcccaaaggggataccggtcaaccaggaccaccgggactccagggagaagctggt
cctccaggtatggaaggaccccgtggattcattggacttccgggtcagcaaggccttaat
ggcaaggttgggattcctggggcacctggagaacgtgggtctgctggaaaatctgggcca
ccgggaccacctggtgtccccggtgtagttgggccacctggcccttctggagaacctgga
ccacctggagagcctggaactcctggaagtccaggcttgccaggagagcccggaatgccc
ggcgaacaaggcaaagaaggcccgcctggaccgatgggacctacagggaaagaaggatct
ccaggtcaaagtggactacctggttttcccggagaaaggggaatgaatggcttaccgggt
atagcaggcttgaaaggtgaaatgggacctctcggaccacctggtacaactggtgataaa
ggtgcacaaggtgagcctggcaaagatggcccacctggctcagaagggcggcaaggtccg
aaaggtccgcctggagcagttggcctcaagggtgaaatgggcgaacctggtttaccaggg
ccaaccggtcgagatggtttaccgggtttgcgaggtctgcctggccctccgggaccggtt
ggagttcctggtgaggacggagataaaggagatattgggcctcctggtgaaaaagggttc
aaaggttctcaaggagaaagtggcccagcaggtccgcctggtatacaaggaatgagaggc
gagcctggaccgacgggaccatccggcgaaaaaggacctccaggagaaatcggaaggcaa
ggaagtaaaggagaagaaggtcctatgggcgttcctggtccagcagggccaatcgggttg
cagggtttacctggaccaacaggtataaaaggagatatcggagacgatgggcccacaggt
ccagtaggtccagctggaactcctggagaacaagggtcaagggggccaaagggaatagag
ggtgttcaaggacctcctggttttgagggtcgacaaggcgacaagggagatgcagggact
cctggacctccaggcccccctggtattgagggaaaaccgggtgagcgaggcgcggtaggc
ccgaagggtgaagaaggtaaggctggcccagttggatcaccaggaggacctggaatcaac
gggcctgagggtccgaaagggcacgcgggtgcaccaggatttccaggaccaccaggcgag
cctggcataatggggccaaaaggagagcctggtaaagacggagacgaaggtcggcctgga
gaagctggagcaacaggtgaaatgggatcacccggaaaagagggagagccaggaccgcca
ggaaaaccgggtcccgaagggccagcgggaatgcaaggcaacacaggattgccaggtgaa
aaaggagatctcggaccaccaggagcccctggtttacaaggacggattggaccacaaggt
gagccagggccacaagggtcatctggacctagaggactaccaggtgcagccggggaaaat
gggccgccaggtttgtcgggagcagttggtcagcctggtaaaataggagcgtccggcccc
aggggaccaaaaggcgaccgtggacgccgagggccgaaaggccaccgtggtgaactcggg
catattggaattaagggagaccaaggcgaaaagggagaaagaggtccgaaagggccagtt
ggaccggagggtgcgaagggcgctgtaggtccacaaggtttgatgggaccaaaaggcaac
gatggtccccaaggtttgcctggcttggaaggtccacctggattaaaaggcatgatgggt
ggggaaggcacgaaaggagatgcaggtccgccaggtcccccaggaccacccggaccccca
gcagaacaactaatgattccaccggagctgtttttacagagggatgaattttcgggtaga
aagcaaagagacgtcgaaccaaagaatgacaaggatgacgtccaggataacataaagaat
cacagcgaggaagaattggggccaaaattcatcgatatgtacagttcgatatacactatg
cggcaagaattagatcgcatacgtaaaccaatgggtaccagggaaaatccagtgaggaca
tgcaaggatctgttttatggacatcctcaattttcagatggttggtactggattgatcca
aatattggaatgccggatgatgcggtatacgtttattgcaatatatcagcttcaggcgaa
acttgtgtgtttcccgacatgcacagcagtcaaatgccgaacattccgtggagaaaggaa
aacgaacacggcgactggtactcgaatcttcgcggaggtttcagaataacatacgagagc
attggtgtcgtccagatgaattttctacgactactgagccaagaagcatatcagaatttc
acctacacatgcataaacagcgctggatggtacagcgtacctggatataatcacgactta
gctctgaaacttcttggtgaaaatgaggataagttctcctacggtggaacacgacctagc
gtaatagttgatggatgtaaaactcgcaaaagtaaaagtgaaacagtgtttgtagtagca
actaaaaaactaaaacaacttccgctaattgatttttatccaattgattacggtttacct
catcaagcctttggtttttcggtaggccccgtatgtttcaaataa
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integrated database retrieval system
