Neodiprion virginianus: 124297608
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Entry
124297608 CDS
T09046
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
nvg
Neodiprion virginianus
Pathway
nvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124297608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvg03019
]
124297608
Messenger RNA biogenesis [BR:
nvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124297608
mRNA degradation factors
3'-5' decay
Pan complex
124297608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
Motif
Other DBs
NCBI-GeneID:
124297608
NCBI-ProteinID:
XP_046604774
LinkDB
All DBs
Position
2:complement(2491890..2497050)
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AA seq
703 aa
AA seq
DB search
MGYVGPPYLRCFYRLRLYILEKIFASRRVFEHRQASLTLEVLEILSLVTTEDKERKNSSG
SCEIFNNEDFKSTKAGGSKNLTENGTVVNAVDGREMDPSMFVTYTPQTNGVPQESKLATY
MNCQSSGVALNTAVVTKHLSGLSLDAQKKTTTSPEFVPGRGIAGSNSSSPNIFNSSYHSQ
ENVGGTTYFYLGTSTTENVSSEEGVEAIGTAGASQIGYVYPGTPSHLQTAKAAKSPASSS
PSAPSTPPPQAVPSFFVSEGLRLDILQKNALTLAQPDPVQFPDLPNEVDNYHELCPLEPI
HKSTSTVLGYQTSTYKATSLKTGTRYCLRRVHDFRLANTKCMVLVDMWKRLTHTNLVQLR
EVFTTKTFGDHSMVFVYDYHPGSETLLNKHFSATELNGYSDPFSSDPNAPRPYSHTKNTI
LRQQHSSMLPESVIWNYIIQLTAALRVIHAAGIACRSLDPTKIILSSRSRLRLSCVAIPD
VVTFDGTAANPLALMPHYQQEDLLALGKLVLALACRSLLAVHRDNMQASLELVARTYSSD
LRNLILYLLSSQQRRSVTDLMPMIGARFYTQLDAVHLRSDVLEDELAKELENGRLFRLLA
KLATINERPELNMEPTWAETGDRYMLKLFRDYVFHQVAADGRPWLDMAHVVSCLNKLDSG
SHDKICLMSRDEQSVLVVSYAELRQCLEMSYAEVVHSAKLDAA
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgggttatgttggtccaccatatcttcgatgtttttatagacttcggttgtacattttg
gaaaaaattttcgcctcgcgtcgcgtttttgagcataggcaggctagcttaacgttggaa
gtcttggaaattctctctctagtgacaacggaagataaagaaagaaagaacagctctggt
agctgcgaaatttttaacaacgaggacttcaaaagtacgaaggcgggaggatcgaaaaat
ctaacggaaaacggaacggtggtcaatgcggtggatggaagagagatggatccgtcaatg
ttcgtcacttacacccctcaaacaaatggagtcccacaggagtccaaacttgcaacctac
atgaactgccaaagctctggagttgccctaaacacagctgtagtgacaaaacatctctcc
ggcctctcgctggatgcacaaaaaaaaactactaccagtccggaatttgtgccgggacga
ggaattgcaggtagcaatagtagctcgccaaatatattcaacagctcctatcattcccag
gagaatgtcggaggaacaacttatttctacctcgggacgtcgacaacggaaaatgtgtca
agcgaagaaggagtcgaagctattggaaccgctggcgcaagtcagataggatacgtttat
ccagggaccccctctcacctgcagactgccaaagcagcaaaatctcccgcatcgagtagt
ccctcggctccttcgacgccccctccacaggccgttccgagtttttttgtcagcgaaggc
ctgcgactggacattctccaaaaaaatgcactaacgttagctcagccagacccggtgcag
tttccagatttgccaaacgaagtagataactaccatgaattatgccctctcgaacccatc
cataaatccacatcgactgtcctcggctatcaaacctccacgtacaaagcgaccagtttg
aaaaccgggactcgctattgcctgcgccgagtacacgactttagacttgccaatacaaaa
tgtatggtcttggtcgatatgtggaagcggttaacgcacactaatttggtccaactgcga
gaagtcttcaccaccaagacctttggtgatcattccatggtattcgtctacgactaccac
cctgggtccgagacgctcttgaacaaacacttctctgctaccgagctcaacggctactca
gatccgttttcgtccgaccccaacgctccccgtccttacagccacacaaagaacaccata
ttgagacaacagcacagcagtatgctgccagaaagcgttatttggaactacattatacag
ctgacagctgctctccgggttattcacgcagctggtattgcgtgtagatctctggaccct
acaaagataattctctcgtcacgaagtcggctgcgtcttagctgcgtcgcgattcccgac
gtcgtgacgtttgatggtacagctgcgaatccgttggcactaatgccgcattatcaacaa
gaagacttgctcgcattaggaaaacttgtgctagctttggcttgccgtagtctcctagcg
gtgcatcgtgacaacatgcaggcctccctggaactggtcgctcgcacctactcgtctgat
ctcagaaaccttatattgtacctgctatcttctcagcagcggagaagcgtcactgattta
atgccaatgattggagctcggttttatactcaactcgacgccgtccatcttcgttcagac
gttctggaagatgaacttgccaaagagctagaaaacggcagattgttcagactactcgca
aaactggcgaccatcaacgaacggccagagctgaacatggagccgacgtgggctgaaacc
ggcgaccgttacatgctgaaactgttcagagactacgtgttccaccaagtagcggcggat
ggaagaccgtggttggacatggcccacgttgtatcttgtctgaacaaactcgactctgga
tctcacgacaagatttgcctgatgtcgcgggatgagcaaagcgtgttggtcgttagttac
gccgagttgcgacagtgtttggaaatgtcatacgccgaggttgtgcattctgcaaagctg
gacgccgcttag
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