Neodiprion virginianus: 124297884
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Entry
124297884 CDS
T09046
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
nvg
Neodiprion virginianus
Pathway
nvg03022
Basal transcription factors
nvg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124297884
09124 Replication and repair
03420 Nucleotide excision repair
124297884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nvg03021
]
124297884
03400 DNA repair and recombination proteins [BR:
nvg03400
]
124297884
Enzymes [BR:
nvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
124297884
Transcription machinery [BR:
nvg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124297884
DNA repair and recombination proteins [BR:
nvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124297884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
124297884
NCBI-ProteinID:
XP_046605193
LinkDB
All DBs
Position
2:38156619..38162198
Genome browser
AA seq
797 aa
AA seq
DB search
MGPPKRFKKDNDKGKWKKRKEDHDEYFDDDHGDGGDTEGIPDAAKNDIEKQDEGAVEDEF
GAKDYRSQMILKPDNSSRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEY
KLTAYSLYAAVSVGLQTHDIIEYLKRLSKTSIPDGIIEFIQLCTLSYGKVKLVLKHNKYF
VESPFPEVLQKLLKDPVIQECRLRRNLDETDKDGFITNVQDKTKAPQFGTKTSATATPTT
APAPAEGNGEQPSAEPVAVPEDISTFYDKIDKEDEDEEEEAQLKTVSFEVNQEKIEVIQK
RCIELEHPLLAEYDFRNDTVNPDINFDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPC
GAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG
CGILVTTYSMITHTQKRSWEAEQTMKWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHC
KLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMTPEFYREY
LSCKTSKKLLLYVMNPSKFRCCQYLIRYHERRGDKTIVFSDNVFALKHYAIKMNKPYIYG
PTSQSERIQILQNFKFNTKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGR
ILRAKKGAIAEEYNAFFYTLVSQDTMEMNYSRKRQRFLVNQGYAYKVITKLAGMDEEPDL
MYKTREEQGQLLQQVLSASDMDADEERIPGEGPRPAMRRPGNMASMSGADDTVYYEYKKS
AASSTANKHPLFKKFRT
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgggcccgccaaagcgattcaaaaaagataatgacaagggcaaatggaaaaaacgtaag
gaagatcacgatgaatatttcgacgacgaccacggtgatggtggtgatactgaaggcatt
cctgatgcggctaaaaatgatattgaaaaacaagacgaaggggctgttgaagacgaattt
ggagctaaagactatcgctcgcaaatgatcttgaagccagacaactcgtcgaggccacta
tgggtggctccaaatggacacatattcttggaatcattttcaccggtatacaaacatgct
cacgattttttaattgccatttccgagcccgtttgtcgaccagagcatattcacgagtac
aaactgactgcttattccttatatgcagccgtgagtgtgggtctccaaacccacgatatt
atcgaatatctaaaacggttgagcaaaactagcatcccagatggaatcattgaattcata
caactgtgcacgttatcttatggaaaggtgaaattggtcttgaaacacaacaaatacttt
gtggaatctccatttccagaagtgttgcagaaactgcttaaagatccagtcattcaagaa
tgcaggttgagaaggaacttggatgagactgacaaagatggtttcattaccaatgttcaa
gataaaacaaaagctcctcagtttggtacaaaaacatcagctactgctaccccaacaaca
gcaccagccccggctgaaggaaatggagagcaaccgtcagcagaaccagttgcagtgcct
gaagatatctcaacattttatgataaaattgataaagaggatgaagatgaggaggaagaa
gcacagctgaaaactgttagctttgaagtcaaccaggaaaaaattgaagtcattcaaaaa
agatgtatcgaattggagcatcctttacttgcagaatatgatttcagaaacgatacagtt
aatcctgacataaattttgacctgaaaccatcagccgtgctgcgaccatatcaagaaaag
agcttaagaaagatgtttggtaacggacgagccaggtcgggtgttatcgtactaccttgt
ggtgctggtaagagtttagttggcgtaacggcttgctgtacagttcggaaacgcgcattg
gtgctttgtaattcaggagtatcggttgagcaatggaaacagcagtttaaaatgtggtcg
acggccgacgattccatgatttgtcgatttacaagcgaagctaaggataagccaatgggt
tgtggtattctggtaacaacttactcgatgataacacatacgcaaaaacggtcgtgggaa
gctgaacagaccatgaaatggttgcaagaacaagaatggggtattatggttttagatgaa
gtacatacaatacctgcgaaaatgtttcgtcgagttttgaccattgttcaatcccactgc
aaactcggactaaccgcaaccttgttgagagaggatgataaaattgcagatctgaatttt
ttaattggtccaaaactctatgaagctaattggcttgagcttcagaaaagaggatttatt
gccagagtacagtgtgctgaggtctggtgtcccatgactccggagttttatagagaatac
ctgagttgtaaaacaagcaagaaactgttgctttacgttatgaatccgagcaaatttcgt
tgctgtcagtatttgattcgatatcatgaaaggaggggtgataagacaattgttttctcc
gacaatgttttcgcactgaaacattatgcaatcaagatgaataaaccctatatttatggt
cctaccagtcagagtgagcgtatacaaatcctccaaaacttcaaattcaatacaaaagtg
aatacaatatttgtgagcaaagtagcagacacatcattcgacttgccagaagcaaatgtt
ttgatacaaatatcttctcacggaggttctaggagacaagaagctcaaagactgggtaga
attttacgagctaaaaaaggcgcaattgctgaagagtacaatgctttcttttacaccttg
gtatcacaggatacaatggaaatgaactattcaagaaagaggcaaaggtttcttgtcaac
caaggatatgcctataaagtcatcaccaaactcgctggaatggatgaggaaccagactta
atgtataaaacacgcgaggaacaaggtcaactattacaacaggtattgtcagcaagtgac
atggatgcggatgaggaaagaattccgggagaagggccaagacctgcaatgaggaggcct
ggaaatatggcatccatgtcaggtgctgacgacacagtatattacgaatacaaaaagtcc
gccgcatcatcgacagccaacaagcatccgttatttaaaaaattccgaacctaa
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