KEGG   Neodiprion virginianus: 124298595
Entry
124298595         CDS       T09046                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
nvg  Neodiprion virginianus
Pathway
nvg03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:nvg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    124298595
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nvg03021]
    124298595
   03036 Chromosome and associated proteins [BR:nvg03036]
    124298595
Transcription machinery [BR:nvg03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     124298595
   Coactivators
    SAGA/TFTC/STAGA complex
     124298595
Chromosome and associated proteins [BR:nvg03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     124298595
    STAGA complex
     124298595
    TFTC complex
     124298595
    SAGA complex
     124298595
    SLIK complex
     124298595
SSDB
Motif
Pfam: WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_WDR3_2nd WD40_Prp19 Beta-prop_EML_2 TFIID_NTD2 WD40_WDHD1_1st WD40_CDC20-Fz WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_Aladin Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_WDR41 WD40_RFWD3 Beta-prop_VPS8 Beta-prop_HPS5 Beta-prop_DCAF4 PEP5_VPS11_N Beta-prop_WDR19_1st Tricorn_2nd RMC1_N Beta-prop_SPT8 WD40_like Beta-prop_RIG_1st Beta-prop_NWD2_C WD_LRWD1 Beta-prop_DCAF12 Cytochrom_D1
Other DBs
NCBI-GeneID: 124298595
NCBI-ProteinID: XP_046606750
LinkDB
Position
2:41744257..41748146
AA seq 652 aa
MDNEKSTMLAVLQLLRKYNLKGTEELFRKEANLTDVSAEDSQQTDSEVSSVLSAYKSEGD
PALYEKAYTELKKFVEGALDIYKHELGTILYPVLVHMYLELVYNNHSGEAKQLLEKFSGN
LEEYYQEDLKRLSNVTKREQIAGNELTDTFKSNQFIIRMSRDTLSILKRHLQEKKHSILL
NIIQEHLYFDMYEGVARNKQQIEATSGAVVGEATRQDNKAKVYYGLLKEPDIQCVPPAEE
EEDDGGGEGGDKPKKKKAKKDPLFSKKTKSDPNAPPVGRMPLPNLKDADKLEKVKALREA
SKRVVLGPDSLPSICFYTLLNSVHSVTAAEVAEDSSLLAIGFSDSAVKVWSLVPQKLRLM
KSGDQLQDIDREADDVLVRMMDDRTAESSRTLYGHSGPIYSLSFSPDRNLLLSSSEDTTV
RLWSLHTWTCVVCYKGHLFPVWSVRFSPHGYYFATGSHDKTARLWATDAHQPLRIFSGHY
SDVDVVQFHPNSNYVATGSSDRTVRLWDCVTGGQVRLMTGHKGPIYSLAFSAEGRFLATA
GADNRVLIWDLAHGHLVAALSSHTATVHCLFFSRDGNILVSGSLDSTLKLWDFTKLAEEM
SLEDVNVSHNPDVKTCVETYLLRTFPTKNSPVLTLHFSRRNLLLAVGMFEVS
NT seq 1959 nt   +upstreamnt  +downstreamnt
atggacaacgagaaaagcacaatgcttgcagtactgcagctgttacggaaatacaattta
aagggtaccgaggagttatttagaaaggaagcaaacttgacggatgtttcagctgaggat
agtcagcaaactgattctgaagttagcagcgtactatcagcttacaaaagcgagggtgat
ccagcgctgtacgagaaagcctataccgaacttaagaaattcgtcgaaggagctctggat
atttacaagcatgaacttggcacaatattgtatccggtattggttcacatgtacctggaa
cttgtttacaacaaccattcaggagaagcaaaacagctgctggagaagttcagtggtaat
ttggaggaatattaccaggaggatctgaagcgattgtcaaatgtcacaaaacgggaacag
attgctggtaatgagctgacggatactttcaagtctaaccagtttataataaggatgtcc
cgagacacgctttccatactcaagcggcatcttcaagagaaaaaacatagcattttgctc
aatattattcaagagcatctttactttgatatgtacgaaggtgtcgctcggaacaagcaa
cagattgaagcaacgtcaggcgctgttgtgggggaagctacgcggcaagataacaaggct
aaagtctattatgggcttttaaaggaaccagatattcagtgcgtcccgccggctgaggaa
gaagaagacgatggcggtggggagggaggagataaaccaaagaaaaagaaagcaaaaaaa
gatccactcttctcgaagaaaactaaatcagaccctaatgcacctccggtcggaagaatg
cccctaccaaatttgaaagatgctgataaactggagaaggttaaagcattgagagaggct
tcaaagagagtggtattggggccagacagtcttccgtcaatatgcttctatactttattg
aattcagtacacagcgttactgctgcagaagtcgcagaagattccagtttgcttgccatt
ggcttcagtgattccgcagtaaaagtatggagcctggttccacaaaaattaagactgatg
aaaagtggggatcaattacaagacatcgaccgcgaagctgacgatgtacttgtgagaatg
atggacgacaggacagctgaatcgtcgagaaccctatacggacacagcggacctatttat
agtttgtcgtttagcccagacagaaatttactactatcttcatcagaggacaccacagta
aggctatggtctcttcatacgtggacctgtgttgtttgctacaagggtcacctgttccct
gtttggtcagtgagattctcaccacatggttactatttcgcgacaggttcccacgacaag
actgcaagactctgggcaactgacgctcatcagcctctccgaattttttccgggcattac
tcagatgtcgatgtcgtacaattccatccaaattcaaattacgttgctacgggatccagc
gaccggacagtcagactgtgggactgtgttactggaggtcaggtccggttaatgaccggc
cacaaaggtccgatatattccctggcattttccgcggaaggtcgcttcctggcgactgcg
ggtgccgataacagagtcctgatttgggatttagcgcacggacatttggtcgcagcctta
tccagccatacagccacagtacattgcttgttcttcagtagagacggtaatatcttagtg
tcaggatccctcgattcgacactgaagctttgggactttaccaaacttgctgaagaaatg
agcttggaggacgttaatgtctcgcataatcctgacgtcaaaacatgcgtcgagacctac
ctcctacgaacttttccgacaaaaaattcacccgttctcaccctccacttttcgcgaaga
aatcttctactagcagtcggtatgttcgaagtatcttag

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