Neodiprion virginianus: 124299041
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Entry
124299041 CDS
T09046
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
nvg
Neodiprion virginianus
Pathway
nvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124299041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nvg03021
]
124299041
03019 Messenger RNA biogenesis [BR:
nvg03019
]
124299041
Transcription machinery [BR:
nvg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124299041
Messenger RNA biogenesis [BR:
nvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
124299041
U7-dependent histone pre-mRNA processing factors
124299041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
124299041
NCBI-ProteinID:
XP_046607830
LinkDB
All DBs
Position
2:27729487..27739785
Genome browser
AA seq
1113 aa
AA seq
DB search
MDPRLHRRQESEKKGSSDLVVEWLNDASMSTSESVKLTNLAKVNEFLIHKEPKLLDLYLD
ETLQFSLDRSSEVRKLIAGFLEEAGCKQPDLIPRLVQTLARLVGDDASAVIKRALRAAGR
ILRATLKWISSVAIITTDMELAWTQLSNLKVAIINMIDSDNDGIRTQAVKFLEGVVLLQT
YPDPDAPKKPDDFSLEDIPLTLKIARRRKLEEEANHVMDLLIKFHGSPHVSSVNLMTCMG
SLALIAKTRPQFMRQVIQALQLLQHDLPPTLSDSQVTSVQKQLKLTLLGLLKHPASIEFA
GTMARQLNQLGAREQEIMKAYPKVEDIRKMKKRQQETAAASAAKRAKLEAAIAVEEPEQQ
PIEIESVKPPELIELSENFISDRLSVEIATELVMDSMAWVPDVMTSVFQREYQPTSTTDI
NVQRQTIARLLAVQIKQAKAKRVKRETKEEDAVMEDLIKNPTITVAEAKRERKREKDREK
EKEAKASLEAHEKSLKMAKNRLKTLKLSEITKPLQRETKEKMLLMAVGRILGAERIAVLG
GVAPVRSKILTTLAATFNPYIREAVLRYITEDMRCRLDLALGWLYEEYALLQGFQRRTTL
TSKPQEAPHQAYNFLLCTLVSAIDLVPGKDRDVLLSRLYLEAPLITEDAVEALKLVSADE
TRGLAPLELLKEMVIRRPTKQLVFLNVLLCHTGHENNTIREAAIEFVVQLYSRPELAKLI
EEYAVLYLGFLRLPNPPEIVFGQDRGRPQIDDQWSESTTRACLGLYLALLSEHQDLIYEL
ARVYTSMGADVKRIILRLVEGPVRLLGMSSPQLLSLVENCPKGAETLVTRVIHILTEKSA
PSAELVAKVRELYQTRVSDVRFLIPVLNGLTKKEVIAALPKLIKLNPIVVKEVFNRLLGT
HNNDSGIPHMSPITPAELLIALHTIDTSKAELKTVIKATSLCFAEKQVYTQETVAVVMQH
LMEMTPLPTLLMRTVIQSLALYPRLSGFVMNILQRLILKQVWKQHKVWEGFVKCCERTQP
QSFSVILQLPPAQLAEALKMSPGLKAPLLAHVESFAENQKAHIPQSVMDVIQGKMLPVVA
DEFDIAPPGEYPLELKSEPMDTDPSEPAPPGLD
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atggacccacgcttacacagaagacaagagtctgaaaaaaagggctcgagcgacttggtc
gtagaatggcttaatgatgcttctatgagcacaagcgaatccgtaaaattaaccaatttg
gccaaagttaatgagtttttgatacacaaggaaccaaagttgctggatctatacttggac
gaaacgttgcaattctctttagataggagtagcgaagttagaaaacttatcgcaggattt
ttggaagaagctgggtgtaaacaacctgacctgattcctcgattagtccaaacacttgca
agattagttggagatgatgcatcagctgtgatcaaacgggcgcttagagcagcgggaaga
attcttagggcaacattgaaatggatatcaagtgttgcgattattacaacagacatggaa
ctcgcttggacacagctgagcaatctgaaggttgcgataataaatatgatcgacagtgac
aatgatggaatcaggacgcaggcagtaaagttcctggaaggagtcgttttgctgcaaaca
tatccagatcctgacgctccaaaaaagccggatgacttctccttagaagatattccatta
acactaaaaatagctcggagaagaaaacttgaggaggaggcaaaccatgttatggatttg
ttgattaaatttcacggttctccacacgttagtagcgtcaatttgatgacttgtatgggg
tccttagcattgattgctaaaactaggcctcagtttatgcgtcaagtgattcaggcctta
caactcctacaacatgatctaccaccaacgctgtccgattcacaagtaacgagtgtccaa
aagcaacttaagctcacgctattgggattgctaaaacaccctgcaagcatagagttcgca
ggaacgatggcaagacaattgaaccagctcggggcaagagagcaagaaatcatgaaggcc
tatccaaaagttgaggatattcgtaagatgaaaaaacggcaacaggaaacagcggcagca
tctgcagccaaacgtgcgaaattggaggctgcaattgcagttgaagagcctgaacagcaa
ccgatagaaattgaatccgtgaagcctcctgaattgattgagctttctgaaaattttatc
agtgaccgtctaagtgtggaaattgccacagaactagttatggatagtatggcttgggtg
ccagatgtaatgacgtcagtgttccaacgagaatatcagccgacgtccacaactgatata
aacgtgcaacgtcaaactatcgccaggctactagccgtacagataaagcaagctaaggcc
aaaagggttaagagagaaacgaaagaggaagatgcggttatggaagacctaataaagaat
ccaacaatcactgtagccgaggcaaaacgtgaaagaaaacgagaaaaggacagagagaaa
gagaaagaagctaaggcttcattggaggcgcacgaaaagtcgcttaaaatggcgaaaaat
cgtttgaaaacgctgaagctatccgaaattacaaaacctcttcaaagagagactaaagag
aaaatgctccttatggctgtaggcagaattctcggagctgagaggatcgctgtactcggt
ggagtggcaccagtcaggtccaagatattgacgaccctagctgctacgttcaacccatac
ataagagaagctgtgctccgctatataaccgaagacatgaggtgtcggcttgatttggca
cttgggtggctctatgaggagtacgctttgcttcagggattccaaaggcgtacaactctg
acgagtaaaccgcaggaagctcctcatcaagcctacaactttttactctgcactttagtt
tctgcaatcgacttggtaccagggaaagatcgagatgtgttgttgtcgcggttgtatctg
gaagctcctctaatcacagaagacgccgtggaagctttaaaactggtctcggccgatgaa
acgagaggactcgcacctttggaattactcaaggaaatggttattcggagaccgacaaag
cagctagtatttttgaatgtattactgtgtcatacaggacatgaaaataatactattcgt
gaagcagcgatagagtttgttgttcaattatatagccggccagagctggccaagttgata
gaagaatatgcagtgctgtatttaggttttctacgattaccaaacccacctgaaattgta
ttcggacaggatagaggaaggccgcagatcgacgatcagtggagtgaatcaacaacccga
gcttgtctaggattgtacctagcattactgtcggaacaccaagatcttatttacgaactc
gccagggtttatacctcaatgggagctgatgtcaaacgtatcatcttacgcttggttgaa
ggaccggtgagactcttgggaatgagtagtccacagctattgtcccttgtcgaaaactgt
ccaaaaggggcggaaaccctggttacgcgagttattcatatccttacggaaaaatccgcg
cctagtgcagaactggtggccaaagtacgcgaactttatcaaacaagagtgtctgatgtt
agatttttgatacctgttcttaacggcttgactaaaaaagaagttatcgccgctcttccc
aaacttatcaagttgaacccgatcgtcgtgaaagaggtattcaatagactccttggaacc
cataataatgacagtggtataccacacatgtcgccaataacaccagcagaacttctcatc
gctttacatactatagatacgagcaaagcagaattaaaaacagtcataaaggcaacttct
ttatgctttgctgagaaacaagtctatacacaagaaacggtggcagtagtgatgcagcat
cttatggaaatgacgcccctgccgacgcttctgatgcgaacagttattcaaagtctagct
ttgtaccctagactgagcggatttgtaatgaacattttacaacgattaattctgaaacag
gtctggaaacagcacaaagtttgggaaggatttgtgaaatgctgcgagcgaactcagccc
cagagtttttcagttatcttacaattaccgcctgcccaattggcagaggcattgaaaatg
tctccgggattgaaggcacctctacttgcacatgttgaatcgtttgccgagaatcagaaa
gctcacattccacagtctgtaatggatgtgatccagggaaaaatgttgcctgttgttgcg
gatgaatttgacattgcccctcctggtgagtaccccttagaactcaaatcagagcccatg
gacactgacccttcggaaccagcgccacctggacttgactag
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