Neodiprion virginianus: 124299095
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Entry
124299095 CDS
T09046
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
nvg
Neodiprion virginianus
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
nvg01009
]
124299095
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvg03019
]
124299095
04131 Membrane trafficking [BR:
nvg04131
]
124299095
03036 Chromosome and associated proteins [BR:
nvg03036
]
124299095
Enzymes [BR:
nvg01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
124299095
Protein phosphatases and associated proteins [BR:
nvg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124299095
Messenger RNA biogenesis [BR:
nvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
124299095
Membrane trafficking [BR:
nvg04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
124299095
Chromosome and associated proteins [BR:
nvg03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
124299095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
NuDC
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
124299095
NCBI-ProteinID:
XP_046607983
LinkDB
All DBs
Position
2:12887447..12897034
Genome browser
AA seq
1202 aa
AA seq
DB search
MTDTNASGNSLFTAARQLAESEIHLIQVIEGTRRSNRKVAKSNMTTTVKNVGGKKSAKSM
SARPSAALAAAKREAAERKLVHPKKSGNTILRDIYQKAMDAQTITRGETGLVWDRSMEEH
RCLWDSAYPECPERFTRILERCKDLGLISRCRVIEAREATHKEILLKHTQQHIDVLKETA
ECKDEDNLEKLASKYDSIYIHPSTYRLSLLATGSTIILLESICKKKVQNGMAIIRPPGHH
AMKAEYCGYCYFNNVAIAAQKMLNDNLASRILIVDWDVHHGQATQQMFYNDPRVVYFSIH
RYENAEFWPNLRESNYDYVGEKKGEGYNFNVPLNKTGMTNADYIAIFQQLLLPMAYEFQP
DLVIVSAGYDAALGCLEFCPDIVIVSAGFDSAIGDEKGEMNVTPACYAHLLHPLMGLAGG
KVAVVLEGGYCLKSLAEGAALTLRTLLGDPCPMLHVLEKPSRSIQESILNVIYAHKSYWS
CYQYQDTHSLNVPANSIEEKNNRHLPNIIFKNREPKPEIYDTRNCYPVPSAELAAEFDTK
LNLLIEFTNLSKAPNKVCIVYDDRMLCHTNIVDNTHPERPERISGIFSKHEEYGFLKRCH
LLQGRMATEEELSLAHSKTYIEMIKKTSSTKLKDLSKQASELKSVYLHTETWKSASVSAG
CLLQVVDSVLTGESQSGLAIVRPPGHHAERDTACGFCIFNNVAVAARYAIKNYNLKRVLI
VDWDVHHGNGTQSILETDPQILYASIHRYDNAGFFPNSKRANYTVTGTGPGEGYNVNIPW
NKKGMGDPEYIASFQQVIMPIAYQFNPELILVSAGFDACIGDPLGGCNVSPEVYGHLTHS
LSSLANGRVILSLEGGYNVSSVSYASLMCTKALLGDPLVMIDLQQPPCSSAINSINNVLR
THKQYWPNLMFQKSLPKENVLPKLKTTTSRNKSEKRRGASRKTSESKIVFEDIESEKLEI
SLPIDKFSLNIVTDEEINKLQNEIENLKIKNVESDSLDFDSSGGHEIHTGIPKKYEEINE
ANYGKTCVNPNQNQGSDRRNDEGDQSGSRGGNNPNDLSGAAGAAGAGSLMQYLSENMQAL
VDGEMFAIVPLRDCPHLPTVEEVPADGIDVRAPCQECNSTAENWICLQCYTVHCARSINE
HAVTHGEETQHPMTLSFSDLSVWCYGCEAYIDNPRLYAARNAAHRSKFNQDLPWTYNNLE
IA
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgacagacacaaatgccagtgggaacagcctatttactgccgctagacaattggcagag
agtgaaatacatctgatccaggtgatagaagggaccagaagaagtaacagaaaagttgca
aaaagtaacatgaccacaacagtgaaaaatgttggcggtaaaaaatcagccaaatcgatg
agtgccaggccttcggcggcgttggcggcagcaaagcgagaggcagcagagcgaaagctt
gtccacccgaaaaaatctggaaatactatcctcagagacatttaccagaaggccatggac
gcccagacaataacgcgtggcgaaacaggtcttgtttgggatcggtcgatggaagaacac
cgttgtctttgggattcggcatatccggaatgccctgagaggttcacaaggattctggaa
agatgcaaagacttgggcttgatcagtcgctgcagggttatagaagcgcgtgaagccact
cacaaagaaatattactcaaacacacacagcagcatattgatgtgctgaaagaaactgca
gaatgcaaagacgaggacaatcttgaaaagttggcttcaaaatatgactctatttacatt
catccttcgacttatagattatcgctgctggctactggttcaacgataattttgctggaa
agcatatgtaaaaaaaaagtacaaaacgggatggctataatcaggccgccaggtcatcat
gcaatgaaggctgagtattgtggctactgttacttcaacaacgtagctattgctgcacag
aaaatgctcaatgataatttggcaagcagaatattaatcgttgactgggacgttcatcac
ggacaagcgacccaacaaatgttttacaatgatccgagagttgtttacttctccatccat
cgatacgaaaatgccgagttttggccgaatcttagggaatcaaattacgattacgttgga
gagaaaaaaggggaaggttacaatttcaacgttcccctcaacaaaactggaatgacaaat
gctgactatatcgccatatttcaacagctccttcttccaatggcctatgagtttcaaccg
gaccttgttattgtctcagctggttacgacgcagctcttggctgccttgagttttgtcct
gacattgtcattgtgtctgccggattcgattcagcaattggcgatgagaagggtgaaatg
aacgtgacgccagcttgttacgcgcatcttttacatccattgatggggttagctggtggt
aaagttgcggttgtattggagggtgggtattgcctaaaatctctagcagaaggagctgcg
ttaactttaagaacattactgggagatccttgcccaatgttgcatgtgctagaaaaaccg
tctcgcagcatacaggaatctattctgaatgtcatatatgcccacaaaagttattggagt
tgttaccaatatcaagacacgcacagcttaaatgttccagcaaatagtatagaggaaaag
aacaacagacacctgcccaacattatttttaaaaatcgggagcctaaaccagagatttac
gacacgcgaaattgttatccagttccgagtgcagagttagctgccgagttcgacaccaag
ttaaatttattgatcgaatttacaaatttaagcaaagcgcctaacaaagtttgcattgtt
tatgacgacagaatgctctgtcatacaaatattgtggataatacccacccagaaaggccc
gagagaatatcaggaattttttccaaacacgaagaatatggatttctcaaacgatgccat
ttgctccaaggaagaatggcgacggaggaagaattgtcactggctcattcgaagacgtat
attgagatgataaaaaaaacctcatcaacaaagctgaaagatctatctaagcaggcgtct
gaattaaagtcagtctaccttcacaccgagacgtggaagagcgcttctgtctctgccgga
tgtttgcttcaagttgtggatagcgtcttgaccggggagagccagtcgggcttggcaatc
gtgaggccgccggggcatcatgcagaacgagatacggcctgtggattctgcatatttaac
aacgtggctgtcgctgccagatatgctataaaaaattataacttgaagagggtgttgata
gtcgattgggacgttcaccatggcaatggaacccagagtattttggaaacagatcctcag
attctgtatgcatcgattcatcgttacgacaacgctggtttcttcccgaattcgaagcgg
gcgaattatacagtgactggaactggtccgggagaaggatataatgtgaatataccttgg
aacaaaaaagggatgggagacccagagtacatagcgagcttccaacaagtcatcatgccg
attgcataccaattcaatcctgaactaattctggtttccgcaggtttcgatgcctgcatt
ggggatcctttgggaggatgcaatgtttcaccggaagtgtacggtcatctcactcactca
ctgagttctttggcaaacggtcgggttattctatcactcgaaggtggctacaacgtcagt
tcggtttcgtacgcatcattaatgtgcacgaaagccctgcttggagatccattggtgatg
attgatctccaacaaccgccgtgttcaagtgccataaactcaatcaacaatgtgttacga
acgcacaagcaatactggccgaatttaatgttccaaaagtctttgccaaaagaaaatgtc
ctcccgaaactcaaaactaccacgtctcgcaataaatcagagaaacgtcgtggtgcttcc
agaaaaacgtccgagtctaagatcgtgtttgaagatatcgagtcggaaaaattggagatc
tctttgccaattgataaattcagcctgaacatagtcacggatgaggaaataaacaagcta
cagaatgagattgaaaatttaaagataaaaaatgtcgaaagcgattctctcgattttgac
agttcaggagggcatgaaattcatacaggaatcccgaaaaaatatgaggaaataaatgaa
gcaaattacggtaaaacctgtgtcaatcctaatcaaaatcaaggatctgatagacgaaat
gacgaaggtgatcaaagtggaagcagaggaggaaataatcctaatgatttgagcggtgct
gctggcgcagcaggagcaggtagcctgatgcagtatctttcggaaaacatgcaggcactg
gtagatggtgaaatgtttgctatcgttccgctacgcgattgtcctcacttacccactgtc
gaagaagtgccagcggacgggatcgacgttcgagctccttgccaagagtgcaatagcact
gcagaaaactggatttgcctgcagtgttacacggtacattgtgcaagaagtatcaatgag
catgcggttactcatggcgaagagacgcagcatccgatgacgcttagcttcagcgatttg
tctgtctggtgttatggttgtgaagcgtacattgacaaccctcgactttacgcagcgaga
aacgcggcccatcgaagtaaatttaatcaggacttaccttggacttacaacaatttggaa
attgcttaa
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integrated database retrieval system
